Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.6e-264 914.8 459 100.0
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 3.8e-207 724.9 460 81.1
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 7.7e-184 647.5 452 73.5
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 2.9e-167 592.4 460 67.6
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 3.8e-159 565.5 436 64.2
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 2.5e-158 562.8 371 71.7
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 2.7e-157 559.3 370 71.9
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 4.7e-157 558.5 436 64.9
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 5.7e-155 551.6 370 71.4
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 9.8e-155 550.8 455 63.5
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 1.3e-154 550.4 435 63.7
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 6.3e-154 548.1 375 69.1
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 1.4e-153 547.0 372 69.1
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 2.4e-153 546.2 370 71.6
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 1.2e-152 543.9 435 64.6
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.2e-152 543.9 434 62.9
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.2e-152 543.9 468 60.9
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.2e-152 543.9 454 62.1
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 2.7e-152 542.7 436 62.2
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.9e-151 539.3 458 60.3
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.1e-150 537.3 458 60.5
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.5e-150 537.0 327 78.3
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.5e-150 537.0 454 61.7
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.9e-150 536.6 346 74.3
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.5e-150 536.2 451 60.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 4.2e-150 535.4 467 58.9
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 4.2e-150 535.4 454 61.5
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.6e-149 532.3 465 58.9
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 4.7e-149 531.9 449 61.2
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.1e-149 531.6 362 69.1
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.0e-148 530.8 449 61.0
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.0e-148 530.8 460 59.6
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.4e-148 530.4 432 62.3
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 2.3e-148 529.6 372 67.7
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.0e-148 529.3 468 59.0
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 8.8e-148 527.7 449 61.0
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.6e-147 526.2 468 59.0
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 4.4e-147 525.4 435 60.7
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 5.7e-147 525.0 366 69.7
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.8e-147 524.2 449 60.8
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 3.7e-146 522.3 434 60.6
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.8e-145 520.0 445 59.1
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.8e-145 520.0 476 57.6
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.8e-145 520.0 476 57.6
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.8e-145 520.0 455 58.5
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 1.8e-145 520.0 379 66.2
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 4.1e-145 518.8 366 67.8
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 5.4e-145 518.5 451 60.1
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 9.2e-145 517.7 374 65.5
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.2e-144 517.3 367 67.3
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.6e-144 516.9 365 68.5
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.6e-144 516.9 365 67.4
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 2.0e-144 516.5 362 67.4
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.7e-143 513.5 457 58.6
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.7e-143 513.5 449 60.6
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.9e-142 510.0 436 59.2
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 2.5e-142 509.6 366 66.1
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 4.3e-142 508.8 461 57.7
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 4.3e-142 508.8 345 69.0
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 4.3e-142 508.8 362 66.6
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 2.1e-141 506.5 450 57.6
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 2.8e-141 506.1 441 59.9
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 3.6e-141 505.8 458 59.0
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 4.7e-141 505.4 452 58.6
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 8.0e-141 504.6 461 56.2
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 1.0e-140 504.2 346 68.8
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.4e-140 503.8 438 59.1
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.8e-140 503.4 377 65.8
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.8e-140 503.4 362 64.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.8e-140 503.4 449 56.3
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 5.2e-140 501.9 450 58.0
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 6.8e-140 501.5 451 57.2
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 6.8e-140 501.5 377 65.5
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 6.8e-140 501.5 452 57.1
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 6.8e-140 501.5 367 65.4
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.5e-139 500.4 457 56.9
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 2.6e-139 499.6 436 56.9
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.4e-139 499.2 377 64.2
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 7.5e-139 498.0 452 57.7
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.2e-138 496.5 362 64.6
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 2.2e-138 496.5 351 67.2
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 4.9e-138 495.4 488 55.1
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 4.1e-137 492.3 372 62.6
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 9.2e-137 491.1 372 62.4
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 2.3e-135 486.5 455 56.3
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 3.9e-135 485.7 362 63.3
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 4.7e-133 478.8 448 54.5
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 4.0e-132 475.7 362 62.7
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 4.4e-131 472.2 477 59.3
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 1.1e-129 467.6 453 55.4
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 6.0e-128 461.8 337 67.4
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 3.3e-126 456.1 436 54.8
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 4.3e-126 455.7 407 59.0
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 1.6e-125 453.8 436 55.3
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 1.6e-125 453.8 369 59.6
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 2.8e-125 453.0 369 59.9
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-124 451.1 369 59.9
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-124 451.1 369 59.9
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.8e-124 450.3 435 54.5
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 4.0e-124 449.1 444 53.4
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 5.2e-124 448.7 441 53.5
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 6.8e-124 448.4 365 60.0
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 3.4e-123 446.0 369 58.8
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.5e-123 444.9 434 54.1
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 1.3e-122 444.1 372 58.3
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.7e-122 443.7 370 59.2
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 2.2e-122 443.4 457 53.6
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 4.9e-122 442.2 446 53.4
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 6.4e-122 441.8 369 58.8
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 6.4e-122 441.8 369 58.8
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 4.1e-121 439.1 373 59.2
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.0e-119 434.5 373 56.8
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.7e-119 433.7 442 51.4
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 5.1e-119 432.2 372 57.5
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.9e-118 430.3 463 51.8
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 5.6e-118 428.7 473 49.7
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 3.6e-117 426.0 367 57.5
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-114 417.5 457 52.1
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 6.4e-114 415.2 297 66.7
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 4.1e-113 412.5 297 66.0
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 9.2e-113 411.4 367 54.2
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 3.5e-112 409.5 382 58.9
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.8e-109 399.8 460 48.9
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 9.3e-105 384.8 328 56.1
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 3.3e-102 376.3 299 61.2
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 6.9e-100 368.6 305 59.0
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 1.3e-98 364.4 303 59.7
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 3.8e-90 336.3 447 45.0
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.4e-90 335.1 297 57.2
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 4.2e-89 332.8 363 47.9
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 4.3e-86 322.8 301 54.5
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.3e-85 321.2 382 45.0
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.6e-83 313.5 459 44.2
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.5e-78 297.7 383 42.8
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.6e-75 287.0 449 43.4
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 7.9e-72 275.4 180 68.3
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.6e-62 243.8 232 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.1e-57 228.4 308 43.2
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 3.0e-55 220.3 367 39.2
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 3.0e-55 220.3 367 39.2
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.7e-53 214.5 214 53.7
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.7e-51 205.7 238 50.0
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 7.7e-51 205.7 127 74.0
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 5.7e-46 189.5 361 34.6
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-43 181.8 373 34.3
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-34 151.8 120 59.2
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 4.9e-29 133.3 118 55.9
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.6e-24 117.1 130 48.5
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 5.2e-23 113.2 396 24.7
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 9.2e-20 102.4 71 73.2
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.2e-19 102.1 256 28.5
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 4.6e-19 100.1 192 29.7
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.8e-15 86.3 53 73.6
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.7e-13 81.6 86 50.0
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.7e-13 81.6 86 50.0
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 2.1e-11 74.7 41 80.5
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 7.8e-11 72.8 82 50.0
Duzib151G1162 Durio zibethinus HOM05D005582 ORTHO05D007028 2.0e-06 58.2 150 32.0


User provided reference genes

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