Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 1.4e-196 689.5 355 100.0
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 3.5e-144 515.4 400 70.8
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 2.3e-111 406.4 421 58.2
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 2.3e-111 406.4 369 62.6
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.5e-110 403.7 326 67.5
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 1.9e-110 403.3 346 64.5
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 2.5e-110 402.9 328 67.1
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 5.7e-110 401.7 378 60.3
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 9.7e-110 401.0 361 63.7
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 8.2e-109 397.9 403 56.6
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 8.2e-109 397.9 416 57.7
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.4e-108 397.1 382 59.9
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.8e-108 396.7 402 58.5
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 2.4e-108 396.4 414 59.4
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 6.9e-108 394.8 407 57.5
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 6.9e-108 394.8 344 63.4
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 6.9e-108 394.8 426 56.6
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 9.0e-108 394.4 414 57.7
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 9.0e-108 394.4 346 62.4
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.5e-107 393.7 344 63.1
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.5e-107 393.7 367 62.1
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 2.0e-107 393.3 414 57.2
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 3.4e-107 392.5 415 57.6
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 7.7e-107 391.3 355 62.5
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 7.7e-107 391.3 345 62.6
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.0e-106 391.0 357 61.1
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.3e-106 390.6 373 59.2
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.7e-106 390.2 321 65.7
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.2e-106 389.8 415 57.3
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.9e-106 389.4 301 69.1
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.9e-106 389.4 347 61.4
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 6.5e-106 388.3 326 63.5
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 8.5e-106 387.9 411 56.4
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.1e-105 387.5 401 55.9
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 3.2e-105 386.0 352 61.4
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 9.4e-105 384.4 388 57.2
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.2e-104 384.0 388 55.2
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.2e-104 384.0 405 56.3
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 2.7e-104 382.9 365 58.6
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 7.9e-104 381.3 398 55.0
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.0e-103 380.9 297 68.0
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 1.4e-103 380.6 324 63.6
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 3.9e-103 379.0 290 69.7
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 5.1e-103 378.6 386 54.7
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 5.1e-103 378.6 300 64.7
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 8.8e-103 377.9 407 56.0
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.5e-102 377.1 402 55.5
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.5e-102 377.1 372 57.0
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.5e-102 377.1 405 56.8
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.5e-102 377.1 380 55.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 2.0e-102 376.7 296 66.2
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 9.7e-102 374.4 370 56.5
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 1.7e-101 373.6 326 62.6
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 3.7e-101 372.5 401 55.6
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 6.3e-101 371.7 401 55.4
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 8.2e-101 371.3 339 59.0
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.1e-100 369.4 337 60.8
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 4.1e-100 369.0 408 53.9
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 6.9e-100 368.2 338 60.4
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 6.9e-100 368.2 350 59.1
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 1.2e-99 367.5 343 59.2
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.5e-99 367.1 323 62.8
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 3.4e-99 365.9 340 59.4
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 4.5e-99 365.5 331 60.4
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.7e-98 363.6 335 60.9
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 2.2e-98 363.2 321 61.7
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.9e-98 362.8 323 61.3
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 6.5e-98 361.7 324 61.7
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 8.5e-98 361.3 293 65.2
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 1.4e-97 360.5 387 55.0
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 2.5e-97 359.8 373 57.6
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 2.5e-97 359.8 336 58.9
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 5.5e-97 358.6 416 52.2
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 2.7e-96 356.3 305 63.3
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 2.7e-96 356.3 338 55.9
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 3.6e-96 355.9 298 62.8
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 3.6e-96 355.9 280 68.6
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.1e-94 350.9 387 51.9
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 7.4e-94 348.2 279 66.3
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.2e-93 346.7 455 47.7
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.7e-93 345.9 316 61.7
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 4.1e-92 342.4 316 58.5
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 4.2e-89 332.4 305 60.7
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 5.2e-87 325.5 352 54.8
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 6.7e-87 325.1 502 44.0
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.1e-84 317.8 252 67.1
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 7.0e-84 315.1 236 69.9
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.2e-83 314.3 299 59.2
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 4.5e-83 312.4 384 50.8
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 5.9e-83 312.0 255 66.3
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 5.9e-83 312.0 289 60.9
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.5e-81 307.4 359 49.9
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 3.2e-81 306.2 261 63.6
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 4.2e-81 305.8 284 62.0
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 6.1e-80 302.0 310 54.8
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 6.1e-80 302.0 338 52.4
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 2.3e-79 300.1 296 56.4
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 1.2e-78 297.7 371 50.9
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 7.7e-75 285.0 243 62.1
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 8.5e-74 281.6 297 55.2
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.5e-73 280.8 340 50.3
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.5e-73 280.0 240 62.9
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.2e-73 279.6 467 41.5
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 6.1e-64 248.8 329 46.2
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.3e-61 241.1 291 50.5
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 7.0e-60 235.3 305 44.3
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 9.2e-60 235.0 194 66.5
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 2.7e-51 206.8 203 58.6
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 2.5e-49 200.3 148 71.6
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 2.8e-40 170.2 206 51.9
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.4e-39 167.9 161 56.5
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 6.0e-35 152.5 158 50.6
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 7.6e-30 135.6 144 50.7
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-29 134.8 111 62.2
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 7.1e-28 129.0 111 59.5
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.8e-23 114.4 119 54.6
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 9.0e-23 112.1 98 62.2
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 7.1e-20 102.4 61 80.3
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 8.1e-16 89.0 128 44.5
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 2.9e-13 80.5 156 46.2
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 7.9e-11 72.4 77 53.2
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 8.1e-08 62.4 127 39.4
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.1e-07 62.0 34 85.3
Haze_16405 Corylus avellana HOM05D016214 ORTHO05D164566 3.4e-06 57.0 34 82.4
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 5.8e-06 56.2 32 87.5


User provided reference genes

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