Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.5e-224 780.4 457 100.0
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.4e-176 622.1 464 81.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.5e-150 535.0 439 75.4
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.2e-121 439.5 469 61.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.8e-107 392.1 483 55.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.9e-106 389.8 469 57.8
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 3.2e-97 359.8 416 56.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.9e-94 350.5 417 55.2
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.1e-88 330.5 418 52.9
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.3e-86 322.8 416 52.9
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.2e-81 306.6 458 52.2
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.7e-80 303.5 406 52.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 4.3e-78 296.2 385 50.4
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 9.9e-75 285.0 444 49.3
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.3e-74 284.6 437 46.0
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.7e-74 284.3 446 47.1
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.7e-72 276.9 421 50.1
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.6e-70 269.2 413 47.5
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.7e-69 266.5 340 54.7
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 8.2e-69 265.4 453 48.6
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.4e-68 264.6 414 47.6
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.4e-68 264.6 414 47.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 7.6e-67 258.8 415 46.7
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.0e-66 258.5 333 54.1
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.4e-65 254.6 467 43.3
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 9.3e-65 251.9 409 45.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.2e-64 251.5 358 48.3
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.5e-64 250.0 414 44.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 4.6e-64 249.6 424 46.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.8e-63 247.7 498 42.0
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 8.7e-63 245.4 528 40.2
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.1e-62 245.0 527 40.2
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.5e-62 244.6 468 42.1
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.6e-61 241.1 484 39.7
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 2.8e-61 240.4 433 42.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 6.3e-61 239.2 385 44.4
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.8e-60 237.7 386 44.8
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.3e-60 236.1 432 41.4
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 4.5e-59 233.0 483 42.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.9e-58 230.3 418 45.2
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 8.5e-58 228.8 428 44.9
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.1e-57 228.4 373 43.2
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.4e-57 228.0 391 44.0
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.4e-57 228.0 391 44.0
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.5e-57 227.3 388 41.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.5e-57 227.3 442 41.0
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 4.2e-57 226.5 449 41.2
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.2e-56 224.9 397 42.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.7e-56 223.8 408 41.9
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.6e-56 223.4 381 42.0
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 6.1e-56 222.6 426 43.9
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.0e-55 221.9 456 42.5
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 3.0e-55 220.3 450 40.0
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 6.7e-55 219.2 406 44.1
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 6.7e-55 219.2 399 42.6
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.5e-54 218.0 491 39.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.3e-54 216.5 480 39.6
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 5.7e-54 216.1 420 43.6
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 9.7e-54 215.3 455 40.4
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.8e-53 213.8 440 41.8
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 8.2e-53 212.2 417 41.0
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.8e-52 211.1 367 44.4
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.8e-52 211.1 269 49.8
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 3.1e-52 210.3 368 42.1
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 4.1e-52 209.9 367 43.6
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 5.3e-52 209.5 462 37.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 9.1e-52 208.8 448 38.6
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.3e-50 204.9 281 48.0
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.7e-50 204.5 399 40.1
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.9e-50 203.8 504 38.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 5.0e-50 203.0 463 40.4
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.9e-49 201.1 318 48.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.9e-49 201.1 458 39.5
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.2e-49 199.1 452 40.0
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 7.2e-49 199.1 465 40.6
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 9.4e-49 198.7 386 39.9
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 9.4e-49 198.7 386 39.9
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 9.4e-49 198.7 471 41.0
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 9.4e-49 198.7 277 47.3
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 2.1e-48 197.6 511 36.6
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 2.7e-48 197.2 524 34.9
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.7e-48 196.4 405 42.5
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 2.0e-46 191.0 510 37.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.6e-46 190.7 443 38.4
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 3.3e-46 190.3 365 39.2
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.7e-45 188.0 481 34.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.7e-45 188.0 379 40.4
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.8e-45 187.2 485 35.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.8e-44 184.5 491 35.2
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.1e-44 183.3 401 40.9
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.0e-42 178.7 398 38.4
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.3e-42 178.3 545 31.2
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.7e-42 177.9 510 33.1
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.0e-42 176.4 488 35.7
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.5e-42 176.0 507 33.7
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.2e-41 173.3 426 35.0
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 5.5e-41 172.9 507 33.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 7.2e-41 172.6 500 34.8
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 7.2e-41 172.6 472 34.5
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.1e-40 171.0 501 39.9
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.0e-39 168.7 451 33.9
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.3e-39 167.5 471 35.5
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.7e-39 166.0 500 34.0
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.3e-38 163.7 321 41.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.3e-37 161.8 393 34.4
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 2.2e-37 161.0 504 33.7
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.8e-37 160.6 494 33.4
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.7e-37 160.2 317 43.2
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 4.8e-37 159.8 404 34.2
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 8.2e-37 159.1 418 33.7
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 5.3e-36 156.4 413 35.4
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.1e-36 155.6 470 34.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.6e-35 154.1 536 33.2
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.7e-34 151.4 481 32.6
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 3.8e-34 150.2 549 32.2
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-33 148.3 519 31.8
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.5e-33 148.3 519 31.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.1e-32 144.4 546 31.7
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.7e-32 144.1 478 31.8
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.7e-32 144.1 168 52.4
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 4.0e-31 140.2 522 30.5
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.6e-30 137.5 478 31.4
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.6e-30 137.5 504 31.7
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 3.3e-30 137.1 476 35.5
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 4.4e-30 136.7 475 31.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.5e-30 136.0 488 31.1
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 9.7e-30 135.6 195 46.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-29 135.2 203 50.7
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 8.2e-29 132.5 502 31.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.1e-28 132.1 361 34.9
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.4e-28 131.7 516 29.5
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.8e-28 131.3 380 33.7
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.1e-28 130.2 495 31.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 5.3e-28 129.8 403 36.5
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.6e-27 128.3 521 29.6
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 4.5e-27 126.7 414 34.3
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.2e-26 124.4 417 33.3
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.2e-26 124.4 379 33.2
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-24 118.6 414 34.8
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.2e-24 118.6 404 32.2
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.2e-24 118.6 425 32.2
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.4e-23 115.2 431 32.5
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 4.0e-23 113.6 448 30.4
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.2e-22 112.1 420 31.7
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.2e-21 107.8 422 31.5
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.1e-20 105.5 504 27.0
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.4e-20 105.1 423 33.3
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 2.4e-20 104.4 144 48.6
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 7.0e-20 102.8 463 30.5
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.0e-19 101.3 136 49.3
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.7e-19 100.9 418 33.7
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.7e-19 100.9 400 31.2
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 5.9e-19 99.8 378 31.7
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 7.7e-19 99.4 405 31.1
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.3e-18 98.6 487 26.1
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 8.6e-18 95.9 517 26.3
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.9e-17 94.7 400 31.5
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.2e-16 92.0 331 31.1
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.6e-16 91.7 385 28.6
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 4.7e-16 90.1 524 27.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.0e-15 89.0 362 31.8
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.4e-15 88.6 96 59.4
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.8e-15 88.2 326 31.0
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 5.2e-15 86.7 399 30.6
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.6e-14 84.3 427 28.3
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.4e-14 83.6 390 27.4
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.4e-12 76.6 386 27.7
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 9.2e-12 75.9 292 29.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 4.5e-11 73.6 438 27.2
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.8e-10 70.5 89 50.6
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.9e-09 68.2 141 37.6
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.2e-08 65.5 96 47.9
FAN09G2065 Fragaria x ananassa HOM05D018448 ORTHO05D020684 2.8e-08 64.3 405 28.6
FAN02G3244 Fragaria x ananassa HOM05D018448 ORTHO05D020684 4.7e-08 63.5 405 28.9
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.1e-08 63.2 96 46.9
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.0e-07 62.4 402 28.1
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 1.4e-07 62.0 114 44.7
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 2.3e-07 61.2 130 36.9
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 5.2e-07 60.1 435 26.0
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 6.8e-07 59.7 525 23.6
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 6.8e-07 59.7 129 37.2
FAN05G0828 Fragaria x ananassa HOM05D018448 ORTHO05D020684 5.8e-06 56.6 403 27.5
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 7.5e-06 56.2 110 38.2


User provided reference genes

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