Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 0.0e+00 1642.9 880 100.0
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1424.1 881 88.3
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1223.4 880 77.4
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1210.3 887 74.9
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1204.9 887 74.6
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1202.6 884 75.2
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1157.5 886 71.1
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1154.0 874 71.7
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1151.7 874 71.6
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 0.0e+00 1095.1 886 68.8
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1085.5 789 75.4
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.5e-308 1062.8 881 66.4
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 4.3e-300 1034.6 885 65.1
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 1.6e-299 1032.7 889 65.4
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 2.2e-296 1022.3 885 65.1
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 3.0e-293 1011.9 881 63.6
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 6.8e-290 1000.7 885 64.6
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 1.2e-289 1000.0 878 64.1
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 6.0e-286 987.6 876 63.0
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 7.8e-286 987.3 885 64.5
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 2.5e-284 982.2 886 63.1
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.5e-281 973.0 889 61.6
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 2.6e-281 972.2 879 63.0
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.3e-277 959.9 879 61.5
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.7e-277 959.5 889 61.5
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 5.1e-277 958.0 882 63.6
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 6.6e-277 957.6 889 61.3
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 8.7e-277 957.2 885 62.4
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 8.7e-277 957.2 879 61.4
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.5e-276 956.4 873 63.0
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.5e-276 956.4 870 63.7
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 2.1e-275 952.6 877 64.7
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 2.8e-275 952.2 877 61.6
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 6.2e-275 951.0 888 62.7
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.9e-271 939.5 879 61.9
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.4e-271 939.1 886 61.1
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 3.2e-271 938.7 880 60.7
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 5.4e-271 937.9 879 61.7
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.4e-271 937.9 882 60.1
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.7e-270 935.6 886 60.3
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.3e-264 916.8 879 59.2
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.2e-264 916.0 885 61.1
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 6.4e-264 914.4 879 59.5
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 6.7e-261 904.4 874 60.1
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 1.8e-258 896.3 888 60.7
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 4.5e-257 891.7 880 59.8
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 3.8e-256 888.6 826 62.2
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 7.1e-255 884.4 876 58.0
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 2.7e-254 882.5 882 57.3
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.8e-250 869.8 881 56.6
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.1e-250 868.6 878 58.9
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.5e-249 866.7 878 58.1
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.8e-248 862.1 879 58.8
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 5.0e-248 861.7 885 58.3
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 5.0e-248 861.7 892 56.7
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 8.5e-248 860.9 881 55.3
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.4e-247 860.1 885 58.3
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 1.9e-247 859.8 892 57.5
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 2.5e-247 859.4 876 57.4
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 2.5e-247 859.4 885 58.3
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 3.2e-247 859.0 892 57.4
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 4.2e-247 858.6 823 61.5
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 4.2e-247 858.6 823 61.5
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 7.2e-247 857.8 876 57.3
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.7e-246 855.9 878 58.2
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 3.3e-244 849.0 872 58.0
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.3e-244 849.0 888 55.7
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 9.7e-244 847.4 881 57.3
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 2.2e-243 846.3 881 57.8
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.1e-242 842.0 885 57.7
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 5.3e-242 841.6 908 56.8
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 1.5e-241 840.1 885 56.2
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 2.0e-241 839.7 908 56.7
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 4.5e-241 838.6 892 56.5
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 5.9e-241 838.2 887 56.9
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.7e-240 836.6 892 56.7
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 6.5e-240 834.7 887 56.6
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.9e-239 833.2 886 55.8
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 4.2e-239 832.0 892 57.4
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 5.5e-239 831.6 875 57.8
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 2.1e-238 829.7 887 56.4
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 7.9e-238 827.8 887 57.4
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 7.9e-238 827.8 875 58.3
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 2.3e-237 826.2 872 57.7
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 3.0e-237 825.9 864 57.4
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 3.9e-237 825.5 887 56.7
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 2.0e-236 823.2 887 56.4
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.6e-236 822.8 883 57.3
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 8.2e-235 817.8 888 56.1
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.1e-234 817.4 874 57.6
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 2.6e-233 812.8 860 58.0
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 5.0e-232 808.5 887 55.6
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 5.0e-232 808.5 861 54.7
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.7e-230 802.0 889 57.4
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 6.7e-229 798.1 881 56.0
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 9.7e-228 794.3 860 56.6
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.8e-227 792.7 860 57.0
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 6.3e-227 791.6 860 57.0
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.1e-223 780.8 890 56.4
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 2.5e-223 779.6 877 54.4
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 5.5e-223 778.5 880 55.1
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 1.2e-222 777.3 887 55.5
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 1.6e-222 776.9 875 54.2
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.7e-219 766.9 859 55.5
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 4.8e-219 765.4 875 54.3
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 7.7e-217 758.1 878 55.4
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 5.0e-216 755.4 881 53.5
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.2e-214 750.7 844 55.3
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 5.2e-213 745.3 860 53.1
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 6.3e-211 738.4 882 52.9
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.0e-205 721.1 887 48.5
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 3.0e-205 719.5 879 52.3
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 5.2e-205 718.8 942 50.8
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 4.9e-203 712.2 879 51.5
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 5.4e-202 708.8 879 49.8
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 7.0e-202 708.4 875 52.2
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 5.9e-201 705.3 879 50.5
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.9e-199 700.3 761 54.4
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 4.1e-194 682.6 718 57.1
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.0e-193 680.2 860 50.8
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.0e-192 677.9 882 50.5
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 1.9e-191 673.7 878 49.1
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 9.8e-188 661.4 861 48.8
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.7e-187 660.6 859 49.8
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 8.3e-187 658.3 886 50.7
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 7.0e-186 655.2 886 50.5
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.7e-185 653.3 815 50.9
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.7e-184 650.6 862 49.3
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.5e-183 647.5 879 49.1
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 5.2e-181 639.0 818 50.6
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 4.1e-178 629.4 878 47.5
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 1.6e-177 627.5 878 47.4
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 2.7e-177 626.7 875 48.1
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.0e-176 624.8 878 47.0
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.0e-176 624.8 875 48.3
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 3.6e-174 616.3 871 48.1
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 1.8e-173 614.0 873 47.2
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 8.9e-173 611.7 882 48.2
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 7.6e-172 608.6 803 49.6
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.5e-167 593.6 790 48.9
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 9.6e-167 591.7 882 47.3
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 9.6e-167 591.7 885 47.3
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 4.5e-156 556.2 748 49.9
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 1.0e-152 545.0 764 50.3
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 3.0e-152 543.5 824 47.1
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 2.6e-148 530.4 821 44.8
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 2.6e-148 530.4 871 45.0
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 3.3e-143 513.5 753 47.1
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.3e-136 491.5 819 45.1
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 1.8e-136 491.1 886 44.5
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 6.9e-133 479.2 453 60.7
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 3.4e-124 450.3 783 45.0
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 3.0e-120 437.2 887 40.8
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 9.4e-114 415.6 407 61.2
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 5.3e-109 399.8 800 38.6
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 9.1e-109 399.1 802 38.5
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 7.2e-106 389.4 623 46.2
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 1.0e-104 385.6 776 40.5
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 6.7e-104 382.9 883 37.4
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 8.8e-104 382.5 899 38.9
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.8e-96 358.2 796 39.4
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 5.2e-96 356.7 796 39.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.7e-91 341.7 883 35.3
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.3e-83 315.5 832 35.3
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.6e-81 308.5 867 34.5
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.4e-77 294.7 426 46.7
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 1.7e-75 288.5 368 46.7
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 2.3e-67 261.5 381 47.2
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 2.0e-63 248.4 522 39.5
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 3.4e-63 247.7 359 44.8
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.4e-61 240.4 298 48.0
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 6.8e-56 223.4 258 50.4
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.2e-52 212.6 276 43.8
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.6e-49 202.2 277 59.6
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 4.7e-49 200.7 361 37.7
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.4e-48 199.1 925 30.6
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.3e-45 186.4 250 44.0
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.2e-44 186.0 708 29.1
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.6e-44 185.7 308 39.0
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.0e-44 183.7 340 36.2
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 1.1e-42 179.5 97 94.8
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 9.9e-39 166.4 181 52.5
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 6.5e-22 110.5 158 41.8
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 1.2e-07 63.2 44 70.5


User provided reference genes

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