Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20347 Vaccinium macrocarpon HOM05D002560 ORTHO05D017207 6.0e-55 217.2 108 100.0
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 4.1e-35 151.4 110 72.7
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.5e-24 114.4 108 62.0
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 5.5e-24 114.4 100 65.0
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 6.1e-23 110.9 107 60.7
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 6.1e-23 110.9 100 63.0
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.3e-22 109.0 107 60.7
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.3e-22 109.0 106 63.2
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 3.0e-22 108.6 106 64.2
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 1.1e-21 106.7 102 63.7
Cpa.g.c37981 Carica papaya HOM05D002560 ORTHO05D017207 1.5e-21 106.3 104 64.4
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 3.3e-21 105.1 104 60.6
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 3.3e-21 105.1 104 60.6
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 3.3e-21 105.1 104 61.5
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 3.3e-21 105.1 104 60.6
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 5.7e-21 104.4 110 57.3
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 2.8e-20 102.1 102 61.8
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.8e-20 102.1 103 58.3
MELO3C027185.2 Cucumis melo HOM05D002560 ORTHO05D017207 4.8e-20 101.3 105 58.1
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 4.8e-20 101.3 105 58.1
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 6.3e-20 100.9 105 59.0
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 8.2e-20 100.5 100 56.0
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 2.4e-19 99.0 109 53.2
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 2.4e-19 99.0 115 50.4
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 2.4e-19 99.0 114 53.5
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 3.1e-19 98.6 114 50.9
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 3.1e-19 98.6 104 57.7
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 4.1e-19 98.2 106 55.7
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 5.3e-19 97.8 100 55.0
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 5.3e-19 97.8 100 62.0
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 5.3e-19 97.8 117 51.3
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 5.3e-19 97.8 103 60.2
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 6.9e-19 97.4 106 56.6
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 9.1e-19 97.1 104 60.6
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 9.1e-19 97.1 103 55.3
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 9.1e-19 97.1 113 51.3
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 9.1e-19 97.1 104 56.7
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.6e-18 95.5 100 56.0
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 2.6e-18 95.5 102 56.9
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 5.9e-18 94.4 110 55.5
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.0e-17 93.6 102 57.8
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.3e-17 93.2 102 57.8
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.3e-17 93.2 102 57.8
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.3e-17 93.2 102 57.8
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 2.9e-17 92.0 102 57.8
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.9e-17 92.0 102 57.8
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 2.9e-17 92.0 107 51.4
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 5.0e-17 91.3 108 53.7
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 1.1e-16 90.1 107 57.0
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 1.1e-16 90.1 113 52.2
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 2.5e-16 89.0 102 56.9
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 2.5e-16 89.0 102 56.9
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 4.2e-16 88.2 111 53.2
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 7.2e-16 87.4 100 52.0
Actinidia32555 Actinidia chinensis HOM05D002560 ORTHO05D017207 9.4e-16 87.0 100 54.0
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 9.4e-16 87.0 106 50.9
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 9.4e-16 87.0 106 50.9
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 8.0e-15 84.0 148 40.5
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.0e-14 83.6 112 50.0
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 3.0e-14 82.0 103 50.5
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 3.0e-14 82.0 112 52.7
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 3.0e-14 82.0 114 45.6
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 3.9e-14 81.6 109 50.5
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 5.2e-14 81.3 109 51.4
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.2e-14 81.3 118 50.0
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.2e-14 81.3 112 50.0
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 6.7e-14 80.9 129 45.7
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 8.8e-14 80.5 118 49.2
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 8.8e-14 80.5 64 64.1
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.1e-13 80.1 112 49.1
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 1.5e-13 79.7 126 46.8
DCAR_023987 Daucus carota HOM05D002560 ORTHO05D017207 2.0e-13 79.3 101 46.5
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.0e-13 79.3 112 51.8
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 2.0e-13 79.3 118 49.2
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 2.0e-13 79.3 103 51.5
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 3.3e-13 78.6 114 50.9
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.7e-13 77.8 100 50.0
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 5.7e-13 77.8 105 52.4
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 5.7e-13 77.8 108 48.1
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 7.4e-13 77.4 105 49.5
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 9.7e-13 77.0 112 49.1
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.3e-12 76.6 100 51.0
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.7e-12 76.3 105 49.5
Gohir.A11G330100 Gossypium hirsutum HOM05D002560 ORTHO05D017207 2.2e-12 75.9 114 45.6
Lj2C63G9 Lonicera japonica HOM05D002560 ORTHO05D003782 2.2e-12 75.9 103 49.5
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 2.2e-12 75.9 109 49.5
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 3.7e-12 75.1 114 46.5
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 3.7e-12 75.1 101 49.5
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 3.7e-12 75.1 108 48.1
COL.COLO4_08634 Corchorus olitorius HOM05D002560 ORTHO05D003782 4.8e-12 74.7 64 64.1
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 8.2e-12 73.9 52 67.3
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 8.2e-12 73.9 105 52.4
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 8.2e-12 73.9 123 44.7
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 1.4e-11 73.2 100 47.0
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.8e-11 72.8 119 47.9
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 1.8e-11 72.8 121 39.7
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 2.4e-11 72.4 51 66.7
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 2.4e-11 72.4 51 66.7
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 2.4e-11 72.4 145 39.3
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.4e-11 72.4 41 75.6
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 2.4e-11 72.4 122 41.0
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 3.1e-11 72.0 112 46.4
Oeu064890.1 Olea europaea HOM05D002560 ORTHO05D017207 3.1e-11 72.0 113 45.1
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 4.1e-11 71.6 110 43.6
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 4.1e-11 71.6 122 41.8
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 5.3e-11 71.2 41 73.2
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 7.0e-11 70.9 100 44.0
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 7.0e-11 70.9 70 54.3
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 7.0e-11 70.9 119 41.2
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 2.6e-10 68.9 106 49.1
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 2.6e-10 68.9 106 49.1
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.6e-10 68.9 52 57.7
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 7.7e-10 67.4 48 66.7
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.0e-09 67.0 122 38.5
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.0e-09 67.0 122 38.5
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 1.0e-09 67.0 106 48.1
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 1.3e-09 66.6 42 71.4
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 2.9e-09 65.5 42 71.4
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 3.8e-09 65.1 103 40.8
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 6.5e-09 64.3 115 46.1
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 6.5e-09 64.3 42 73.8
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 8.5e-09 63.9 115 45.2
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 8.5e-09 63.9 115 45.2
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.1e-08 63.5 120 40.0
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 1.5e-08 63.2 121 38.8
Ah.15g090290 Amaranthus hybridus HOM05D002560 ORTHO05D003782 1.9e-08 62.8 132 35.6
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 1.9e-08 62.8 114 43.0
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 1.9e-08 62.8 54 59.3
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 2.5e-08 62.4 100 43.0
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 3.2e-08 62.0 106 46.2
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 3.2e-08 62.0 99 41.4
Phvul.008G088000 Phaseolus vulgaris HOM05D002560 ORTHO05D017207 4.2e-08 61.6 60 61.7
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 4.2e-08 61.6 41 68.3
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 5.5e-08 61.2 43 62.8
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 5.5e-08 61.2 41 70.7
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 7.2e-08 60.8 110 40.9
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 9.4e-08 60.5 64 56.2
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 2.7e-07 58.9 109 40.4
PGSC0003DMG400011867 Solanum tuberosum HOM05D002560 ORTHO05D013255 2.7e-07 58.9 100 40.0
TAR636G3231 Trochodendron aralioides HOM05D002560 ORTHO05D003782 2.7e-07 58.9 70 47.1
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 4.7e-07 58.2 71 46.5
SGA_v2.0_scaffold204G41670 Striga asiatica HOM05D002560 ORTHO05D017207 8.0e-07 57.4 37 67.6
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 2.3e-06 55.8 104 42.3
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 2.3e-06 55.8 51 58.8
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 3.0e-06 55.5 104 42.3


User provided reference genes

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