Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 2088.9 1077 100.0
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1729.9 1075 82.9
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1726.8 1075 82.8
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1690.2 1077 81.2
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1579.3 1081 74.6
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1576.6 1077 74.5
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1567.7 1060 77.5
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1567.7 1075 73.2
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1562.7 1081 73.6
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1560.8 1083 73.4
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1557.7 1082 73.4
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1544.6 1110 70.5
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1544.6 1077 73.0
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1543.1 1079 72.7
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1541.9 1081 72.7
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1538.5 1077 72.5
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1537.7 967 80.6
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1535.8 1124 69.8
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1530.0 1077 72.4
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1525.0 1077 71.2
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1523.1 1068 72.9
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1519.2 1081 72.2
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1518.8 1082 71.6
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1517.7 1084 72.0
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1514.2 1077 70.8
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1513.4 1075 71.4
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1511.9 1081 71.3
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1511.5 1081 71.3
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1511.5 1081 71.4
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1507.7 1080 71.8
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1500.7 1080 70.6
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1500.3 1081 71.3
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1499.2 1082 70.2
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1498.8 1086 70.6
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1494.9 1080 70.0
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1494.2 1080 70.1
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1493.4 1081 70.3
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1489.9 1110 68.5
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1489.2 1211 65.2
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1486.9 1080 70.3
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1486.1 1082 69.8
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1482.6 1087 70.3
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1482.6 1077 69.4
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1481.5 1087 70.3
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1481.1 1080 69.3
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1480.3 1080 69.3
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1479.9 1080 69.6
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1478.0 1081 70.4
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1477.2 1080 69.1
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1476.8 1081 69.0
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1475.3 1080 69.1
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1475.3 1134 67.9
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1473.8 1081 69.2
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1470.3 1083 69.5
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1469.9 1081 69.0
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1469.1 1081 68.5
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1466.1 1077 71.0
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1465.3 1080 69.3
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1462.2 1080 69.0
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1461.0 1081 69.8
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1459.5 1081 68.1
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1459.1 1080 68.0
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1458.0 1080 68.2
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1458.0 1081 68.1
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1458.0 1081 68.2
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1457.6 1080 68.0
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1455.3 1081 67.9
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1448.3 1083 69.7
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1441.8 1078 67.3
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1440.6 1082 67.8
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1438.7 1078 67.0
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1434.5 1080 67.8
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1433.3 1089 68.0
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1431.4 1081 67.2
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1429.8 1097 67.2
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1426.0 1078 66.6
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1423.7 967 74.0
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1413.3 1079 67.5
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1413.3 1081 67.9
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1394.8 1081 66.8
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1392.1 1085 66.8
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1376.3 1096 67.1
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1364.7 1083 66.3
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1351.7 1165 62.7
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1343.9 1099 65.6
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1325.1 948 70.9
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1299.6 1086 61.4
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1287.3 988 66.8
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1284.2 1081 60.1
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1277.7 1080 61.8
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1251.5 1070 61.8
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1248.4 1081 60.6
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1219.9 850 70.2
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1166.8 1089 57.4
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 0.0e+00 1142.1 840 71.2
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1123.6 863 68.1
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1113.6 1019 56.9
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 3.7e-311 1071.6 733 74.1
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 3.2e-305 1052.0 941 56.7
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 9.2e-297 1023.8 711 73.3
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 6.4e-290 1001.1 666 74.8
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 3.9e-279 965.3 1080 47.3
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 1.6e-277 959.9 666 71.0
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.4e-273 946.0 1084 46.8
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.6e-264 916.8 1081 45.5
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 6.9e-252 874.8 592 74.8
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 2.8e-245 852.8 1061 45.1
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 5.0e-242 842.0 670 63.7
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 3.8e-234 815.8 563 73.2
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 3.9e-231 805.8 1092 41.6
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 3.1e-228 796.2 563 70.3
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 5.5e-225 785.4 562 69.6
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 6.3e-221 771.9 521 76.4
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 1.7e-202 710.7 1085 39.3
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.8e-191 674.1 1083 40.4
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.5e-169 600.5 483 65.2
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 3.1e-159 567.0 459 68.4
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 1.8e-154 551.2 410 70.5
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.0e-138 498.8 598 47.2
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 1.4e-127 461.8 322 73.3
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 2.1e-123 448.0 481 55.3
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.8e-122 444.9 389 59.6
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.1e-121 442.2 1091 30.0
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 4.7e-115 420.2 304 68.1
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 4.7e-115 420.2 460 51.3
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 2.4e-111 407.9 401 57.1
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 2.5e-108 397.9 1226 27.7
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 4.9e-96 357.1 296 65.5
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 3.7e-80 304.3 216 72.7
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 4.6e-78 297.4 358 45.3
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 1.3e-77 295.8 213 66.2
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-69 266.9 290 46.2
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.5e-65 255.8 141 86.5
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 1.7e-64 252.3 271 55.4
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 7.6e-49 200.3 231 48.1
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 1.2e-41 176.4 145 67.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 1.6e-38 166.0 184 52.7
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 5.6e-36 157.5 181 50.3
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 6.5e-32 144.1 88 78.4
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 1.9e-31 142.5 92 72.8
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 1.9e-31 142.5 179 45.8
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 2.5e-28 132.1 183 38.8
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 9.6e-28 130.2 91 65.9
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 8.2e-27 127.1 79 78.5
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 2.4e-26 125.6 76 73.7
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 5.0e-24 117.9 82 70.7
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.4e-23 116.3 133 53.4
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 1.4e-23 116.3 80 71.2
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 4.8e-19 101.3 121 47.1
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.8e-19 101.3 68 75.0
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 3.8e-16 91.7 89 50.6
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 6.5e-16 90.9 59 74.6
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 7.9e-14 84.0 98 43.9
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 5.1e-13 81.3 139 38.8
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 7.4e-12 77.4 47 76.6
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.4e-10 72.4 865 21.3
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 3.1e-10 72.0 47 76.6
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 2.5e-07 62.4 610 21.1
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 2.5e-07 62.4 39 74.4
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 2.1e-06 59.3 102 37.3
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 7.9e-06 57.4 47 51.1


User provided reference genes

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