Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20294 Vaccinium macrocarpon HOM05D007530 ORTHO05D009556 2.8e-17 90.9 47 100.0
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 5.5e-13 76.6 47 80.9
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 9.4e-13 75.9 46 80.4
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 9.4e-13 75.9 47 78.7
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 1.6e-12 75.1 47 78.7
CSS0006801 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 3.6e-12 73.9 46 80.4
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 3.6e-12 73.9 47 78.7
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 3.6e-12 73.9 46 76.1
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 3.6e-12 73.9 46 76.1
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 8.0e-12 72.8 47 80.9
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 1.0e-11 72.4 47 78.7
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 1.0e-11 72.4 47 78.7
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 4.0e-11 70.5 47 76.6
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 4.0e-11 70.5 47 74.5
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 6.8e-11 69.7 44 75.0
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 8.8e-11 69.3 46 69.6
Peaxi162Scf00014g00124 Petunia axillaris HOM05D007530 ORTHO05D009556 8.8e-11 69.3 47 70.2
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 8.8e-11 69.3 47 72.3
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 1.2e-10 68.9 45 77.8
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 1.5e-10 68.6 47 74.5
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 1.5e-10 68.6 47 74.5
CAN.G243.17 Capsicum annuum HOM05D007530 ORTHO05D009556 2.0e-10 68.2 47 70.2
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 4.4e-10 67.0 47 72.3
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 5.7e-10 66.6 41 78.0
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 7.5e-10 66.2 47 68.1
Cpa.g.sc11.95 Carica papaya HOM05D007530 ORTHO05D009556 9.8e-10 65.9 41 80.5
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 9.8e-10 65.9 47 68.1
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 1.3e-09 65.5 41 78.0
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 1.7e-09 65.1 41 78.0
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 1.7e-09 65.1 47 68.1
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.8e-09 64.3 47 66.0
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 2.8e-09 64.3 47 66.0
Sabra16G0114900 Salix brachista HOM05D007530 ORTHO05D000135 2.8e-09 64.3 45 73.3
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 3.7e-09 63.9 42 73.8
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 4.8e-09 63.5 42 76.2
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 4.8e-09 63.5 42 71.4
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 4.8e-09 63.5 42 71.4
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 4.8e-09 63.5 42 71.4
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 4.8e-09 63.5 42 71.4
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 4.8e-09 63.5 41 73.2
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 4.8e-09 63.5 42 69.0
Oeu033582.2 Olea europaea HOM05D007530 ORTHO05D009556 8.3e-09 62.8 55 61.8
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 1.1e-08 62.4 42 71.4
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 1.1e-08 62.4 41 78.0
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 1.4e-08 62.0 42 71.4
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 1.4e-08 62.0 41 73.2
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 2.4e-08 61.2 47 66.0
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 2.4e-08 61.2 44 65.9
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.4e-08 61.2 41 70.7
arahy.Tifrunner.gnm1.ann1.K2ZES1 Arachis hypogaea HOM05D008645 ORTHO05D009556 3.1e-08 60.8 41 70.7
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 4.1e-08 60.5 47 66.0
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 4.1e-08 60.5 47 63.8
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 4.1e-08 60.5 46 65.2
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 4.1e-08 60.5 45 62.2
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 7.0e-08 59.7 47 63.8
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 9.1e-08 59.3 44 65.9
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 9.1e-08 59.3 41 68.3
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 9.1e-08 59.3 47 61.7
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 9.1e-08 59.3 47 66.0
Lj1g0004890 Lotus japonicus HOM05D007530 ORTHO05D009556 1.6e-07 58.5 40 67.5
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 1.6e-07 58.5 40 67.5
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 2.0e-07 58.2 42 66.7
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 2.0e-07 58.2 42 66.7
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 2.0e-07 58.2 40 67.5
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 2.0e-07 58.2 42 69.0
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 3.5e-07 57.4 47 59.6
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 3.5e-07 57.4 44 59.1
Hma1.2p1_0024F.1_g016010 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 5.9e-07 56.6 46 63.0
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 5.9e-07 56.6 47 63.8
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 7.7e-07 56.2 44 56.8
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 1.3e-06 55.5 47 57.4
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 3.8e-06 53.9 46 65.2
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 5.0e-06 53.5 39 64.1
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 5.0e-06 53.5 42 59.5
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 6.5e-06 53.1 39 61.5
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 6.5e-06 53.1 39 61.5
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 6.5e-06 53.1 39 61.5
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 6.5e-06 53.1 39 61.5
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 6.5e-06 53.1 38 65.8
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 8.5e-06 52.8 41 58.5


User provided reference genes

Program Settings