Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 3.9e-136 488.0 231 100.0
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 4.6e-121 438.0 231 91.3
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 2.9e-115 418.7 231 87.0
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 2.9e-115 418.7 231 87.4
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.2e-114 415.2 235 86.0
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 2.1e-113 412.5 231 85.7
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 2.0e-111 406.0 231 84.4
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 1.3e-110 403.3 231 84.0
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 2.8e-110 402.1 231 82.3
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.7e-110 401.7 231 83.1
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 6.3e-110 401.0 253 78.3
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.3e-110 401.0 232 83.6
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 6.3e-110 401.0 232 83.6
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.1e-109 400.2 232 84.1
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.4e-109 399.8 231 83.1
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.8e-109 399.4 231 83.5
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.8e-109 399.4 231 82.7
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 2.4e-109 399.1 231 82.7
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 9.1e-109 397.1 231 81.4
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 9.1e-109 397.1 230 82.2
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 9.1e-109 397.1 230 82.2
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.2e-108 396.7 231 82.7
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 1.5e-108 396.4 232 83.2
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 1.5e-108 396.4 231 82.7
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.5e-108 396.4 229 81.7
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 2.0e-108 396.0 235 81.7
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 4.5e-108 394.8 232 82.8
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 5.9e-108 394.4 231 81.0
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 1.0e-107 393.7 231 81.0
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.7e-107 392.9 234 80.8
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.7e-107 392.9 232 81.9
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 2.9e-107 392.1 231 81.4
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 6.5e-107 391.0 232 81.9
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 8.5e-107 390.6 232 82.3
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 1.9e-106 389.4 231 79.7
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.2e-105 386.7 231 80.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 2.1e-105 386.0 231 80.1
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.1e-105 386.0 232 81.5
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.1e-105 386.0 232 81.5
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 3.6e-105 385.2 232 81.0
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 3.6e-105 385.2 231 79.2
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 4.7e-105 384.8 241 78.4
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.0e-104 383.6 231 80.5
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.4e-104 383.3 231 80.1
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.3e-104 382.5 264 72.0
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 3.9e-104 381.7 231 78.8
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 5.2e-104 381.3 231 80.1
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 5.2e-104 381.3 233 78.1
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 5.2e-104 381.3 232 78.4
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 8.8e-104 380.6 233 79.8
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 8.8e-104 380.6 233 78.1
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 1.1e-103 380.2 231 77.9
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.5e-103 379.8 231 78.8
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 2.6e-103 379.0 232 79.7
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.3e-103 378.6 215 84.2
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 7.4e-103 377.5 231 76.2
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.3e-102 376.7 216 81.9
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 2.2e-102 375.9 233 78.5
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 2.8e-102 375.6 232 78.9
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 3.7e-102 375.2 219 79.9
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 4.8e-102 374.8 232 78.9
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.8e-102 374.8 232 79.3
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 4.8e-102 374.8 233 78.5
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 8.2e-102 374.0 232 78.4
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.1e-101 373.6 231 76.6
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 2.4e-101 372.5 232 76.7
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 3.1e-101 372.1 236 77.1
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 3.1e-101 372.1 232 76.7
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 7.0e-101 370.9 233 77.7
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.6e-100 369.8 232 76.3
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 2.0e-100 369.4 232 75.9
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 2.0e-100 369.4 232 75.9
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 3.5e-100 368.6 232 75.9
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 3.5e-100 368.6 232 75.9
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 5.0e-99 364.8 232 75.4
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.0e-99 364.8 216 81.0
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 2.5e-98 362.5 232 75.0
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.1e-97 359.4 232 74.1
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 4.7e-97 358.2 231 76.2
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 6.1e-97 357.8 206 84.0
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 2.3e-96 355.9 257 70.0
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.0e-96 355.5 235 71.1
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 4.0e-96 355.1 202 83.2
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 5.2e-96 354.8 227 74.0
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 8.8e-96 354.0 206 82.5
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 8.8e-96 354.0 204 82.4
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 9.7e-95 350.5 204 80.4
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.3e-94 350.1 219 75.8
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.3e-94 350.1 235 70.2
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 1.7e-94 349.7 233 73.8
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.7e-94 349.7 230 72.6
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-94 349.7 214 79.4
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 3.1e-93 345.5 205 81.0
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.1e-93 345.1 206 79.6
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 4.5e-92 341.7 194 81.4
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 4.5e-92 341.7 215 75.3
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.0e-91 340.5 202 79.7
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.3e-91 340.1 196 81.1
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 2.3e-88 329.3 204 76.0
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 8.8e-88 327.4 208 74.0
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 5.4e-85 318.2 213 67.6
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 9.5e-82 307.4 213 64.8
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.2e-81 307.0 232 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 4.9e-78 295.0 213 63.8
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.0e-72 275.4 188 72.9
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.0e-72 275.4 188 72.9
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 8.9e-72 274.2 216 60.2
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.7e-70 270.0 161 78.9
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.0e-67 260.8 161 75.2
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 2.8e-65 252.7 149 79.9
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 3.7e-62 242.3 149 76.5
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 8.3e-62 241.1 149 77.2
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.6e-59 231.5 141 79.4
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.1e-57 226.5 146 72.6
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 3.4e-55 219.2 137 74.5
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.9e-53 213.4 160 66.9
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.7e-51 206.8 106 90.6
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.5e-39 167.2 93 83.9
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 2.7e-36 156.4 105 73.3
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.7e-35 153.7 86 83.7
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 3.3e-34 149.4 82 85.4
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.3e-27 127.5 219 35.2
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.8e-19 100.5 222 32.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 6.9e-16 88.6 64 67.2
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 4.9e-14 82.4 40 90.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 2.8e-09 66.6 80 45.0
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 8.2e-09 65.1 47 59.6
MD12G1146300 Malus domestica HOM05D000026 ORTHO05D000094 9.0e-08 61.6 75 48.0


User provided reference genes

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