Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 5.3e-181 637.5 308 100.0
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 2.8e-153 545.4 343 79.6
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 3.6e-145 518.5 322 78.0
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.8e-144 516.2 313 80.8
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 2.6e-143 512.3 318 79.6
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 2.2e-142 509.2 322 77.0
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 6.4e-142 507.7 323 77.7
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 8.3e-142 507.3 304 80.6
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.1e-141 506.9 322 77.0
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.4e-141 506.5 321 76.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.8e-141 506.1 310 79.7
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 5.4e-141 504.6 321 75.7
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 7.0e-141 504.2 322 77.0
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.5e-140 501.9 321 75.7
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 4.6e-140 501.5 322 75.5
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.3e-139 500.0 325 76.9
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.3e-139 500.0 322 75.5
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.3e-139 499.2 313 80.2
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.0e-139 498.8 321 76.0
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 3.9e-139 498.4 319 76.8
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 3.9e-139 498.4 319 76.8
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 5.0e-139 498.0 321 75.7
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 8.6e-139 497.3 322 75.5
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 8.6e-139 497.3 325 76.0
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.1e-138 496.9 319 77.1
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.9e-138 496.1 323 74.6
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 4.3e-138 495.0 321 75.4
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 4.3e-138 495.0 322 74.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.6e-138 494.6 316 74.7
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 9.5e-138 493.8 321 75.4
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 9.5e-138 493.8 311 77.2
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 1.2e-137 493.4 318 75.8
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 2.1e-137 492.7 320 74.1
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 4.7e-137 491.5 320 73.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 4.7e-137 491.5 319 74.6
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 6.2e-137 491.1 322 74.2
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 6.2e-137 491.1 323 74.3
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.1e-136 490.3 316 74.7
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.1e-136 490.3 311 76.2
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.1e-136 490.3 321 73.8
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.8e-136 489.6 313 74.1
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 3.1e-136 488.8 313 76.0
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 3.1e-136 488.8 318 75.2
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.1e-136 488.8 316 74.1
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 3.1e-136 488.8 321 73.5
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 3.1e-136 488.8 319 74.6
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.8e-136 487.6 314 75.5
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.5e-135 486.5 319 72.1
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.0e-135 486.1 320 72.5
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 2.0e-135 486.1 318 74.2
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.0e-135 486.1 319 73.4
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-135 485.0 322 72.4
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 4.4e-135 485.0 315 73.0
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 5.8e-135 484.6 322 72.4
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 5.8e-135 484.6 321 72.0
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 9.8e-135 483.8 316 73.4
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.2e-134 482.6 307 74.6
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.2e-134 482.6 327 73.4
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-134 482.3 306 74.8
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.9e-134 482.3 319 73.0
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.9e-134 482.3 306 77.5
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.9e-134 482.3 320 74.1
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.7e-134 481.9 316 73.1
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 4.9e-134 481.5 341 68.6
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 4.9e-134 481.5 324 73.1
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 8.3e-134 480.7 315 73.3
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.1e-133 480.3 301 76.7
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.4e-133 479.9 315 73.7
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.4e-133 479.9 302 75.5
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-133 479.6 319 72.4
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-133 479.6 319 72.4
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.9e-133 479.6 320 70.9
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 3.2e-133 478.8 313 74.1
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.2e-133 478.8 334 71.0
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 3.2e-133 478.8 321 71.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 4.1e-133 478.4 307 73.9
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 5.4e-133 478.0 321 72.0
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 9.2e-133 477.2 336 71.1
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.2e-132 476.9 321 71.0
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.2e-132 476.9 317 74.1
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-132 476.5 312 73.4
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.6e-132 476.5 314 73.2
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.0e-132 476.1 307 73.3
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.0e-132 476.1 311 73.6
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 3.5e-132 475.3 323 72.1
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.3e-131 473.4 321 71.0
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.3e-131 473.4 311 71.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.3e-131 472.6 323 70.9
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.1e-130 470.3 316 72.5
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 3.3e-130 468.8 323 70.6
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.3e-130 468.8 317 71.6
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.3e-130 468.4 319 73.0
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 4.3e-130 468.4 312 72.8
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 9.5e-130 467.2 324 69.8
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 9.5e-130 467.2 320 68.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.6e-129 466.5 281 82.6
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.6e-129 466.5 308 72.4
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 2.8e-129 465.7 317 71.9
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 3.6e-129 465.3 315 70.5
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.6e-129 465.3 308 73.7
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.8e-128 463.0 318 69.2
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 4.0e-128 461.8 299 73.9
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 8.9e-128 460.7 320 69.7
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.9e-126 454.9 310 72.3
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 5.4e-125 451.4 330 66.4
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 7.8e-124 447.6 294 73.1
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.3e-122 441.8 430 54.7
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 9.2e-117 424.1 274 74.1
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-116 423.7 294 70.7
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 6.0e-116 421.4 341 63.9
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-114 417.2 277 72.9
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.8e-112 409.8 289 69.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 4.0e-112 408.7 290 66.6
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 5.8e-111 404.8 268 73.5
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.4e-109 400.2 286 66.4
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.5e-108 395.6 283 67.8
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.0e-103 379.8 291 64.3
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 5.8e-103 378.3 313 62.0
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 3.3e-98 362.5 300 58.7
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.8e-96 356.7 244 69.7
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 4.6e-92 342.0 292 57.9
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 3.3e-90 335.9 237 69.6
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-87 327.0 258 64.7
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 4.6e-84 315.5 243 62.1
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 6.0e-84 315.1 294 54.1
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.3e-81 307.4 214 71.0
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.2e-81 306.6 168 85.1
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 4.1e-80 302.4 209 70.8
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.8e-78 295.8 288 52.4
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.3e-65 254.2 218 60.6
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.1e-58 231.1 155 71.6
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.3e-57 227.6 127 81.1
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.6e-55 220.7 262 48.1
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.0e-46 191.4 115 72.2
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 5.9e-39 165.6 144 57.6
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.6e-38 161.8 95 71.6
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-33 147.9 143 53.8
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 2.2e-33 147.1 145 53.1
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.3e-33 145.2 81 75.3
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.8e-27 127.5 72 83.3
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.8e-27 127.5 89 66.3
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 6.6e-22 109.0 146 42.5
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.5e-21 107.1 81 63.0
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.2e-20 104.8 59 81.4
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 8.0e-20 102.1 57 77.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 3.3e-13 80.1 44 77.3
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 7.3e-13 79.0 44 77.3
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-12 78.2 43 79.1
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.6e-12 77.8 35 94.3
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.8e-12 77.0 41 78.0
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.9e-08 64.3 37 83.8
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 4.1e-08 63.2 77 45.5
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 8.6e-06 55.5 50 62.0


User provided reference genes

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