Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.1e-237 826.2 406 100.0
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 3.6e-108 396.0 545 47.3
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 1.9e-77 293.9 701 34.0
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.6e-63 247.7 704 30.5
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 6.8e-51 205.7 280 43.2
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 1.2e-50 204.9 336 38.7
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.6e-50 203.8 340 38.5
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 4.4e-50 203.0 318 39.6
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 7.5e-50 202.2 322 39.1
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.2e-49 200.7 367 36.8
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 4.9e-49 199.5 318 38.7
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 4.9e-49 199.5 265 43.4
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 6.4e-49 199.1 265 44.2
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 6.4e-49 199.1 266 45.1
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 1.1e-48 198.4 321 38.9
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 1.4e-48 198.0 265 43.8
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 1.9e-48 197.6 265 43.8
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 1.9e-48 197.6 265 43.8
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.9e-48 197.6 275 42.5
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 1.9e-48 197.6 265 43.8
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 2.4e-48 197.2 264 43.2
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 3.2e-48 196.8 281 42.7
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 3.2e-48 196.8 290 42.8
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 4.1e-48 196.4 280 41.8
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 5.4e-48 196.1 318 39.3
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 7.0e-48 195.7 368 35.1
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 9.2e-48 195.3 265 42.3
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 9.2e-48 195.3 282 42.6
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 9.2e-48 195.3 266 43.6
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 1.2e-47 194.9 262 43.5
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 1.6e-47 194.5 356 36.5
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 2.1e-47 194.1 266 44.0
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 2.1e-47 194.1 281 42.0
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 2.1e-47 194.1 273 41.0
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 2.7e-47 193.7 265 42.3
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 3.5e-47 193.4 265 43.0
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 3.5e-47 193.4 364 37.6
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 3.5e-47 193.4 259 43.6
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 3.5e-47 193.4 265 42.6
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 4.6e-47 193.0 275 41.5
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 4.6e-47 193.0 275 41.5
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 4.6e-47 193.0 280 41.1
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 4.6e-47 193.0 325 37.8
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 6.0e-47 192.6 265 42.6
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 6.0e-47 192.6 266 44.4
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 6.0e-47 192.6 280 41.1
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 6.0e-47 192.6 280 40.7
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 6.0e-47 192.6 280 40.7
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 6.0e-47 192.6 280 40.7
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 7.8e-47 192.2 280 40.7
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 7.8e-47 192.2 280 40.4
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 1.0e-46 191.8 275 41.1
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 1.3e-46 191.4 280 40.4
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.3e-46 191.4 275 41.1
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.3e-46 191.4 275 41.1
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 1.3e-46 191.4 276 42.8
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.3e-46 191.4 263 42.6
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.7e-46 191.0 265 43.0
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.7e-46 191.0 275 41.1
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.7e-46 191.0 281 41.6
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 2.3e-46 190.7 348 37.4
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.3e-46 190.7 265 41.9
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 2.3e-46 190.7 280 41.4
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 3.0e-46 190.3 265 41.9
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.9e-46 189.9 280 40.4
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 3.9e-46 189.9 276 41.3
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 3.9e-46 189.9 280 40.4
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 5.1e-46 189.5 365 35.9
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 5.1e-46 189.5 357 35.6
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 6.6e-46 189.1 265 41.9
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 8.6e-46 188.7 348 37.1
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 8.6e-46 188.7 265 41.9
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 1.9e-45 187.6 259 42.9
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.9e-45 187.6 265 41.9
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.9e-45 187.6 265 41.9
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 1.9e-45 187.6 280 40.7
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 2.5e-45 187.2 259 43.2
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 2.5e-45 187.2 352 36.9
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 3.3e-45 186.8 280 39.3
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.3e-45 186.8 319 38.9
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.3e-45 186.4 280 39.6
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 4.3e-45 186.4 326 36.5
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 7.3e-45 185.7 259 42.5
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 7.3e-45 185.7 259 42.9
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 7.3e-45 185.7 265 41.5
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 7.3e-45 185.7 263 42.2
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 9.5e-45 185.3 281 40.2
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 9.5e-45 185.3 281 40.2
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 1.2e-44 184.9 371 35.8
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.6e-44 184.5 275 40.0
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.6e-44 184.5 275 40.0
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 1.6e-44 184.5 265 41.5
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 2.1e-44 184.1 260 43.5
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 3.6e-44 183.3 265 41.1
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.7e-44 183.0 275 39.6
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 6.2e-44 182.6 259 42.1
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 6.2e-44 182.6 259 42.1
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 8.1e-44 182.2 318 38.7
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 8.1e-44 182.2 259 42.9
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 1.1e-43 181.8 265 40.8
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 1.8e-43 181.0 259 42.5
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.8e-43 181.0 267 40.8
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 3.1e-43 180.3 262 42.0
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 4.0e-43 179.9 265 41.9
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 4.0e-43 179.9 265 41.9
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 4.0e-43 179.9 265 41.9
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 4.0e-43 179.9 264 40.5
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 4.0e-43 179.9 347 36.3
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 4.0e-43 179.9 362 35.4
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 6.8e-43 179.1 279 38.4
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 8.9e-43 178.7 260 41.9
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 1.2e-42 178.3 340 36.2
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 1.2e-42 178.3 266 40.2
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 1.5e-42 177.9 266 40.2
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 2.0e-42 177.6 276 39.1
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 3.4e-42 176.8 265 40.8
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 3.4e-42 176.8 265 41.5
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 5.8e-42 176.0 435 32.9
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.3e-41 174.9 255 41.2
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 2.2e-41 174.1 248 40.7
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 2.2e-41 174.1 269 39.8
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 4.9e-41 172.9 265 41.1
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 6.4e-41 172.6 354 36.4
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 6.4e-41 172.6 278 38.5
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 8.3e-41 172.2 266 39.5
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 8.3e-41 172.2 253 38.7
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 1.1e-40 171.8 340 35.9
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 2.4e-40 170.6 422 30.1
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 7.1e-40 169.1 278 37.1
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 2.1e-39 167.5 266 38.3
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 3.5e-39 166.8 263 38.4
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 6.0e-39 166.0 256 41.0
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 1.0e-38 165.2 253 40.7
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 1.7e-38 164.5 282 38.7
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 8.6e-38 162.2 248 39.9
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 8.6e-38 162.2 346 32.9
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.9e-37 161.0 307 35.5
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 3.3e-37 160.2 264 37.5
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.4e-35 154.8 179 45.8
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 1.8e-35 154.5 357 33.1
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 2.6e-34 150.6 270 36.7
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 2.6e-34 150.6 269 38.3
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 3.4e-34 150.2 279 33.7
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 5.8e-34 149.4 278 33.8
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 9.9e-34 148.7 278 35.3
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.3e-33 148.3 249 38.6
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 2.9e-33 147.1 269 35.7
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 3.8e-33 146.7 285 32.6
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.8e-33 146.7 285 32.6
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 1.9e-32 144.4 225 40.9
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.6e-31 141.4 215 40.9
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 3.9e-30 136.7 232 37.1
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.8e-27 127.9 180 43.9
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 4.9e-25 119.8 252 33.3
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 6.0e-23 112.8 268 31.0
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 2.8e-20 104.0 252 30.2
Dinv37234 Davidia involucrata HOM05D002855 ORTHO05D029235 6.2e-20 102.8 134 42.5
Hma1.2p1_0111F.1_g053510 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 2.4e-16 90.9 132 39.4
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 3.2e-16 90.5 156 34.6
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 4.2e-16 90.1 176 33.5
Hma1.2p1_0111F.1_g053470 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 7.1e-16 89.4 318 25.5
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 7.1e-16 89.4 135 38.5
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 1.6e-15 88.2 153 33.3
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 2.7e-15 87.4 156 34.0
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 1.3e-14 85.1 153 32.7
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 3.0e-14 84.0 156 33.3
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 3.9e-14 83.6 154 33.1
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 3.3e-13 80.5 43 81.4
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 4.3e-13 80.1 153 34.0
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 2.1e-12 77.8 158 35.4
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.1e-12 77.8 251 27.1
Lj3P975T65 Lonicera japonica HOM05D002855 ORTHO05D029235 2.8e-12 77.4 123 40.7
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 3.7e-12 77.0 153 31.4
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 1.1e-11 75.5 396 25.3
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 1.1e-11 75.5 153 32.7
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.1e-11 75.5 396 25.3
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.1e-11 73.9 76 52.6
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 9.0e-11 72.4 138 31.9
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 2.9e-09 67.4 38 78.9
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 2.1e-07 61.2 49 53.1
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 2.1e-07 61.2 49 53.1
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.0e-06 58.9 317 24.3


User provided reference genes

Program Settings