Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.3e-202 709.5 359 100.0
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 9.0e-148 527.3 342 80.7
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.2e-123 447.2 348 68.1
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.3e-117 427.2 348 64.9
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 2.2e-117 426.4 347 62.8
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.3e-114 417.2 348 64.4
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 5.0e-114 415.2 344 62.2
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.5e-113 413.7 342 64.0
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.5e-113 413.7 344 64.0
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 4.2e-113 412.1 349 62.2
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 7.2e-113 411.4 347 63.1
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 9.4e-113 411.0 346 63.9
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.2e-112 410.6 347 62.8
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.1e-112 409.8 346 63.6
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 3.6e-112 409.1 343 63.8
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.7e-112 408.7 346 63.6
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.0e-111 407.5 346 63.3
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-111 407.1 346 63.6
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.8e-111 406.8 350 61.1
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 4.0e-111 405.6 352 61.6
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 6.8e-111 404.8 331 65.9
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.2e-110 404.1 344 62.2
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 2.0e-110 403.3 350 62.3
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 4.4e-110 402.1 347 63.1
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 4.4e-110 402.1 346 62.4
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 1.3e-109 400.6 346 62.4
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 4.8e-109 398.7 346 62.1
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 1.1e-108 397.5 346 61.8
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.4e-108 397.1 352 60.8
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.4e-108 397.1 347 61.7
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 1.8e-108 396.7 347 61.1
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 2.4e-108 396.4 349 59.6
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 4.1e-108 395.6 346 60.7
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 2.7e-107 392.9 347 59.7
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 4.5e-107 392.1 349 59.9
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 1.7e-106 390.2 344 62.8
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 2.9e-106 389.4 349 60.2
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 6.6e-106 388.3 347 59.7
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 6.6e-106 388.3 347 59.9
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.1e-105 387.5 347 59.9
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 3.3e-105 386.0 335 62.4
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 7.2e-105 384.8 349 58.7
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 9.5e-105 384.4 350 59.4
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 2.8e-104 382.9 347 59.7
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 8.0e-104 381.3 344 58.7
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 2.3e-103 379.8 347 59.4
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 3.0e-103 379.4 345 59.1
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 6.8e-103 378.3 344 58.7
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.2e-101 373.2 345 57.7
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 2.8e-101 372.9 361 55.7
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 6.3e-101 371.7 348 57.2
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.0e-99 366.7 345 57.7
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 7.8e-99 364.8 363 56.5
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 6.6e-98 361.7 348 55.7
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 7.3e-97 358.2 342 57.0
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 2.1e-96 356.7 343 56.6
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 3.6e-96 355.9 349 57.3
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 8.0e-96 354.8 332 57.8
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.8e-95 353.6 347 54.2
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.3e-95 353.2 347 54.5
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 5.2e-95 352.1 352 57.1
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 8.9e-95 351.3 343 54.5
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 3.4e-94 349.4 346 53.2
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 6.4e-93 345.1 352 57.1
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 5.4e-92 342.0 348 54.6
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 7.8e-91 338.2 351 55.0
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.3e-90 337.4 343 52.8
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 3.9e-90 335.9 348 54.3
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 6.6e-90 335.1 348 53.2
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 8.6e-90 334.7 348 52.6
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.1e-89 334.3 348 52.3
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.1e-89 334.3 348 53.2
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.5e-89 334.0 348 53.2
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.5e-89 334.0 348 53.2
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.9e-89 333.6 348 53.2
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.9e-89 333.6 334 52.7
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.9e-89 333.6 348 53.2
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.5e-89 333.2 348 52.9
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.3e-89 332.4 343 56.3
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.3e-89 331.6 343 56.3
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 7.3e-89 331.6 339 56.0
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 9.5e-89 331.3 349 52.7
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.8e-88 329.7 348 52.6
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 2.8e-88 329.7 350 53.1
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.8e-87 327.0 350 52.9
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 4.0e-87 325.9 350 51.7
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 6.8e-87 325.1 349 52.4
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 8.9e-87 324.7 350 51.7
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.5e-86 323.9 353 51.8
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.6e-86 323.2 348 52.3
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 2.6e-86 323.2 348 52.9
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 3.4e-86 322.8 345 51.9
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 9.8e-86 321.2 354 52.3
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.2e-85 320.1 349 51.6
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.2e-85 320.1 350 51.7
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 6.4e-85 318.5 348 51.7
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 5.4e-84 315.5 348 51.1
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 5.4e-84 315.5 349 52.4
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 5.4e-84 315.5 349 52.4
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.3e-82 310.8 350 50.9
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 3.3e-81 306.2 257 62.6
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 1.1e-76 291.2 346 50.9
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 3.3e-73 279.6 353 47.0
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 5.2e-71 272.3 351 50.1
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 2.0e-70 270.4 226 65.0
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 1.7e-69 267.3 344 47.4
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 4.6e-67 259.2 322 48.8
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.2e-62 244.6 285 50.9
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 8.4e-61 238.4 362 40.6
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.3e-58 231.1 231 56.7
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 6.6e-58 228.8 254 51.2
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 8.4e-53 211.8 363 38.0
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.1e-52 211.5 346 41.0
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.8e-48 196.1 347 41.5
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 8.7e-42 175.3 191 53.9
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 9.6e-41 171.8 345 35.4
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.8e-39 167.5 349 35.2
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 5.0e-37 159.5 355 33.8
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.1e-36 158.3 155 52.9
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 1.1e-33 148.3 364 31.3
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.5e-33 147.9 116 60.3
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 7.9e-27 125.6 119 58.0
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 6.7e-18 95.9 375 25.6
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.0e-13 82.0 88 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 3.6e-11 73.6 154 33.1
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.8e-10 71.2 149 35.6
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 5.2e-10 69.7 138 31.9
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 4.1e-07 60.1 98 41.8


User provided reference genes

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