Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 3.7e-312 1074.7 537 100.0
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 2.1e-185 652.9 379 86.5
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 1.9e-173 613.2 379 81.0
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 2.3e-163 579.7 382 74.3
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.5e-162 576.2 379 75.5
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 3.4e-159 565.8 371 77.4
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.0e-158 564.3 375 73.9
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.7e-158 563.5 382 72.0
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 2.9e-158 562.8 379 72.0
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.9e-157 560.1 375 73.9
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.9e-157 560.1 377 73.2
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 4.6e-156 555.4 377 72.9
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.9e-155 552.4 379 71.8
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.5e-154 550.4 376 72.6
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.5e-154 549.7 375 73.3
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 3.3e-154 549.3 376 71.3
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 7.4e-154 548.1 379 71.0
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 1.3e-153 547.4 379 71.5
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.3e-153 547.4 377 71.1
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 4.8e-153 545.4 377 70.3
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 4.8e-153 545.4 377 71.6
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 4.8e-153 545.4 428 66.4
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 8.2e-153 544.7 379 69.9
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.1e-152 544.3 378 71.2
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.8e-152 543.5 377 71.4
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.8e-152 543.5 377 71.6
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.4e-152 543.1 377 71.4
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 4.1e-152 542.3 379 69.7
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.6e-151 539.7 376 70.7
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 3.8e-150 535.8 375 69.1
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.5e-150 535.0 377 68.7
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 3.2e-149 532.7 375 70.1
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 7.2e-149 531.6 375 69.9
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 9.4e-149 531.2 376 68.9
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 2.1e-148 530.0 376 68.4
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 2.7e-148 529.6 375 69.6
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.0e-147 527.7 379 68.3
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.0e-147 527.7 377 68.7
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.9e-147 525.8 376 67.6
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.9e-147 525.8 376 67.8
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.5e-146 523.9 376 68.9
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 5.7e-146 521.9 382 67.0
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 2.8e-145 519.6 377 67.9
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 6.3e-145 518.5 375 68.3
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 6.3e-145 518.5 378 67.7
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 8.2e-145 518.1 377 67.6
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 5.3e-144 515.4 379 66.8
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.5e-143 513.8 375 68.8
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.0e-143 513.5 377 66.8
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 5.9e-143 511.9 377 66.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.3e-142 510.8 377 66.3
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.7e-142 510.4 375 67.2
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 2.2e-142 510.0 381 68.0
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.9e-142 509.6 386 65.0
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 5.0e-142 508.8 377 66.8
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 8.5e-142 508.1 380 64.7
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.1e-141 507.7 379 65.2
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 2.1e-140 503.4 379 65.2
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 6.7e-139 498.4 379 63.9
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 4.4e-138 495.7 377 63.9
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 2.2e-137 493.4 378 64.8
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 3.7e-137 492.7 377 65.0
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 2.6e-135 486.5 379 62.3
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 5.9e-135 485.3 377 61.8
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.3e-134 484.2 376 63.0
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 1.3e-134 484.2 379 62.0
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.2e-134 483.4 379 62.0
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 2.9e-134 483.0 382 61.0
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 3.8e-134 482.6 374 62.6
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 6.5e-134 481.9 379 61.5
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 8.5e-134 481.5 378 63.8
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 2.5e-133 479.9 362 65.2
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.2e-133 479.6 406 60.1
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 4.2e-133 479.2 380 60.3
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 2.1e-132 476.9 380 60.3
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 3.6e-132 476.1 381 60.4
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 4.7e-132 475.7 400 60.8
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 8.0e-132 474.9 380 60.3
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.0e-131 474.6 380 60.3
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 1.4e-131 474.2 379 60.4
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 2.3e-131 473.4 380 60.0
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 2.3e-131 473.4 380 60.0
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 5.2e-131 472.2 379 61.2
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 2.0e-130 470.3 365 65.8
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.1e-128 462.6 423 56.7
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 6.5e-126 455.3 377 61.5
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 8.8e-123 444.9 375 60.0
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 5.7e-122 442.2 379 60.2
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.7e-121 439.5 377 57.3
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 7.7e-119 431.8 314 67.5
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.0e-118 431.4 386 57.8
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.0e-115 421.4 368 54.6
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 9.2e-104 381.7 267 69.7
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 1.6e-103 380.9 356 53.4
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 3.6e-100 369.8 375 47.5
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 3.5e-95 353.2 272 63.6
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 2.9e-89 333.6 407 47.7
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 4.6e-87 326.2 274 60.2
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.8e-84 317.0 191 77.5
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.3e-81 308.1 247 64.4
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 1.8e-75 287.7 360 41.1
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.9e-69 267.7 362 39.0
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 2.2e-49 201.1 223 47.1
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 2.2e-49 201.1 223 47.1
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.6e-47 194.9 169 55.6
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 7.9e-47 192.6 133 73.7
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 3.3e-45 187.2 139 62.6
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.6e-44 184.9 166 57.2
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 8.2e-44 182.6 124 66.9
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 2.5e-40 171.0 112 66.1
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 3.2e-40 170.6 121 67.8
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 3.6e-39 167.2 362 33.7
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 3.4e-34 150.6 362 32.9
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 3.1e-27 127.5 109 63.3
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 4.1e-27 127.1 115 57.4
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 5.5e-24 116.7 337 28.2
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.2e-18 99.0 82 65.9
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 2.1e-15 88.2 50 84.0
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.8e-14 85.1 52 78.8
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 2.8e-12 77.8 69 59.4
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 6.3e-12 76.6 112 40.2
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 2.4e-11 74.7 74 60.8
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 5.9e-10 70.1 51 64.7
AagrBONN_evm.TU.Sc2ySwM_362.1936 Anthoceros agrestis HOM05D001142 ORTHO05D004628 2.2e-09 68.2 341 21.1
Migut.F00246 Erythranthe guttata HOM05D002314 ORTHO05D002538 2.2e-09 68.2 370 26.2
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 3.8e-09 67.4 44 72.7
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 5.0e-09 67.0 74 54.1
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.5e-08 65.5 94 44.7
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 1.5e-08 65.5 333 23.4
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 2.5e-08 64.7 78 48.7
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 2.5e-08 64.7 48 64.6
CAN.G438.76 Capsicum annuum HOM05D001142 ORTHO05D004628 2.5e-08 64.7 341 25.8
Peaxi162Scf00015g00448 Petunia axillaris HOM05D001142 ORTHO05D004628 2.5e-08 64.7 341 24.3
Thecc.01G027000 Theobroma cacao HOM05D001367 ORTHO05D005289 2.5e-08 64.7 333 24.6
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.2e-08 64.3 53 64.2
Gohir.D10G091500 Gossypium hirsutum HOM05D001367 ORTHO05D005289 7.2e-08 63.2 333 23.7
Manes.01G140400 Manihot esculenta HOM05D001367 ORTHO05D005289 2.7e-07 61.2 334 22.8
Cre06.g278750 Chlamydomonas reinhardtii HOM05D000406 ORTHO05D002714 3.6e-07 60.8 278 24.5
COL.COLO4_21999 Corchorus olitorius HOM05D001367 ORTHO05D005289 3.6e-07 60.8 335 23.6
AL8G45150 Arabidopsis lyrata HOM05D001367 ORTHO05D005289 8.0e-07 59.7 318 23.9
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.0e-06 59.3 63 46.0
Gorai.011G100500 Gossypium raimondii HOM05D001367 ORTHO05D005289 1.0e-06 59.3 334 23.7
Pp3c21_17980 Physcomitrium patens HOM05D001142 ORTHO05D004628 1.0e-06 59.3 368 20.7
Sed0016744 Sechium edule HOM05D001142 ORTHO05D004628 1.4e-06 58.9 235 24.3
QL06p034902 Quercus lobata HOM05D001367 ORTHO05D005289 2.3e-06 58.2 336 21.4
QL10p007477 Quercus lobata HOM05D001367 ORTHO05D005289 3.0e-06 57.8 334 21.6
BcaB04g18277 Brassica carinata HOM05D001003 ORTHO05D002734 5.2e-06 57.0 39 66.7
Lj3g0017049 Lotus japonicus HOM05D001142 ORTHO05D004628 5.2e-06 57.0 224 21.9
Oeu024067.1 Olea europaea HOM05D001142 ORTHO05D004628 5.2e-06 57.0 332 22.9
TAR375G0890 Trochodendron aralioides HOM05D005972 ORTHO05D007548 6.8e-06 56.6 32 75.0
PSO063G2835 Papaver somniferum HOM05D001142 ORTHO05D004628 8.8e-06 56.2 338 22.5
Pp3c18_6190 Physcomitrium patens HOM05D001142 ORTHO05D004628 8.8e-06 56.2 369 20.3


User provided reference genes

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