Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 1.6e-176 623.2 470 100.0
vmacro07608 Vaccinium macrocarpon HOM05D030287 ORTHO05D008751 1.9e-44 184.5 111 85.6
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 9.4e-36 155.6 255 45.5
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 2.6e-22 110.9 231 39.4
TPR.G16511 Trifolium pratense HOM05D000158 ORTHO05D000197 2.9e-21 107.5 133 44.4
TPR.G27324 Trifolium pratense HOM05D000158 ORTHO05D000197 3.8e-21 107.1 133 44.4
TPR.G7156 Trifolium pratense HOM05D000158 ORTHO05D000197 5.0e-21 106.7 134 41.8
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 8.5e-21 105.9 82 79.3
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 9.4e-20 102.4 242 38.4
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 9.4e-20 102.4 242 38.4
TPR.G33065 Trifolium pratense HOM05D000158 ORTHO05D000197 2.0e-17 94.7 125 43.2
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 9.7e-17 92.4 230 36.5
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 9.7e-17 92.4 255 36.1
TPR.G1745 Trifolium pratense HOM05D000158 ORTHO05D000197 3.1e-15 87.4 66 57.6
TPR.G7440 Trifolium pratense HOM05D000158 ORTHO05D000197 3.1e-15 87.4 66 57.6
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 9.1e-15 85.9 245 48.6
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 1.2e-14 85.5 246 35.0
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.2e-14 85.5 269 35.7
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 2.6e-14 84.3 211 34.6
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 2.6e-14 84.3 264 35.6
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 7.7e-14 82.8 105 54.3
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.7e-13 81.6 222 34.7
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 2.2e-13 81.3 90 60.0
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 2.9e-13 80.9 266 33.8
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 2.9e-13 80.9 266 33.8
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.9e-13 80.9 264 32.2
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 3.8e-13 80.5 260 33.8
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 5.0e-13 80.1 270 32.6
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 5.0e-13 80.1 221 33.5
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 6.5e-13 79.7 95 51.6
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 8.5e-13 79.3 267 33.0
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 8.5e-13 79.3 95 58.9
TPR.G3175 Trifolium pratense HOM05D000158 ORTHO05D000197 8.5e-13 79.3 61 55.7
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 1.1e-12 79.0 249 32.5
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 1.1e-12 79.0 60 75.0
CSS0037840 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 1.1e-12 79.0 163 33.7
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.5e-12 78.6 60 75.0
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.5e-12 78.6 270 33.0
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.5e-12 78.6 56 78.6
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.5e-12 78.6 56 78.6
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.5e-12 78.6 229 34.1
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 1.5e-12 78.6 268 32.1
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 1.9e-12 78.2 267 33.3
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 1.9e-12 78.2 68 69.1
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 3.2e-12 77.4 83 56.6
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 4.2e-12 77.0 273 33.0
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 5.5e-12 76.6 262 32.1
CSS0047079 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 9.4e-12 75.9 154 31.8
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 9.4e-12 75.9 267 31.1
vmacro05337 Vaccinium macrocarpon HOM05D030287 ORTHO05D018099 9.4e-12 75.9 64 64.1
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 1.2e-11 75.5 203 34.0
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 1.2e-11 75.5 216 32.4
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 1.6e-11 75.1 69 68.1
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 2.1e-11 74.7 228 33.8
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 4.7e-11 73.6 85 57.6
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 4.7e-11 73.6 82 57.3
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 4.7e-11 73.6 209 33.0
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 6.1e-11 73.2 272 31.6
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 6.1e-11 73.2 87 52.9
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 6.1e-11 73.2 87 52.9
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.0e-10 72.4 221 33.5
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 1.4e-10 72.0 263 30.8
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 1.8e-10 71.6 257 32.7
vmacro10485 Vaccinium macrocarpon HOM05D000312 ORTHO05D000221 1.8e-10 71.6 53 73.6
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.3e-10 71.2 215 34.9
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 2.3e-10 71.2 260 32.7
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 3.0e-10 70.9 249 32.1
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 4.0e-10 70.5 221 37.1
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 6.8e-10 69.7 287 32.1
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 8.8e-10 69.3 217 37.8
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 1.2e-09 68.9 260 30.0
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.5e-09 68.6 90 50.0
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 2.0e-09 68.2 216 31.9
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.6e-09 67.8 62 61.3
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 2.6e-09 67.8 249 32.5
TPR.G289 Trifolium pratense HOM05D000158 ORTHO05D000197 3.4e-09 67.4 56 50.0
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 4.4e-09 67.0 219 32.0
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 5.7e-09 66.6 75 56.0
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 5.7e-09 66.6 95 49.5
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 5.7e-09 66.6 49 77.6
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 1.7e-08 65.1 62 58.1
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 3.7e-08 63.9 48 72.9
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 1.1e-07 62.4 69 55.1
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 1.1e-07 62.4 69 55.1
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 1.1e-07 62.4 214 31.8
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 1.4e-07 62.0 85 52.9
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 1.8e-07 61.6 252 31.0
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 4.1e-07 60.5 91 46.2
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 4.1e-07 60.5 91 46.2
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 4.1e-07 60.5 91 46.2
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 2.0e-06 58.2 82 52.4
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 4.5e-06 57.0 244 27.0
arahy.Tifrunner.gnm1.ann1.V5HQ6B Arachis hypogaea HOM05D000158 ORTHO05D000197 5.9e-06 56.6 63 44.4


User provided reference genes

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