Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19827 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 8.9e-104 380.2 180 100.0
vmacro19618 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 3.9e-99 364.8 179 95.5
Rhsim04G0203300 Rhododendron simsii HOM05D004849 ORTHO05D005955 1.3e-97 359.8 179 94.4
Dinv38407 Davidia involucrata HOM05D004849 ORTHO05D005955 4.0e-96 354.8 179 92.7
CSS0004513 Camellia sinensis var. sinensis HOM05D004849 ORTHO05D005955 9.0e-96 353.6 179 91.6
CAN.G69.23 Capsicum annuum HOM05D004849 ORTHO05D005955 1.2e-95 353.2 179 90.5
GSVIVG01017905001 Vitis vinifera HOM05D004849 ORTHO05D005955 1.5e-95 352.8 179 92.2
Sabra08G0157700 Salix brachista HOM05D004849 ORTHO05D005955 3.4e-95 351.7 179 89.9
Cfa015600 Carpinus fangiana HOM05D004849 ORTHO05D005955 4.5e-95 351.3 179 91.1
Haze_00945 Corylus avellana HOM05D004849 ORTHO05D005955 4.5e-95 351.3 179 91.1
Solyc01g079840.3 Solanum lycopersicum HOM05D004849 ORTHO05D005955 4.5e-95 351.3 179 89.9
Sopen01g031590 Solanum pennellii HOM05D004849 ORTHO05D005955 4.5e-95 351.3 179 89.9
PGSC0003DMG400008991 Solanum tuberosum HOM05D004849 ORTHO05D005955 4.5e-95 351.3 179 89.9
CiPaw.01G161400 Carya illinoinensis HOM05D004849 ORTHO05D005955 5.8e-95 350.9 179 89.9
Hma1.2p1_0511F.1_g169010 Hydrangea macrophylla HOM05D004849 ORTHO05D005955 5.8e-95 350.9 179 89.9
TWI73G0956 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 5.8e-95 350.9 179 89.9
Dinv44492 Davidia involucrata HOM05D004849 ORTHO05D005955 7.6e-95 350.5 179 91.6
Potri.008G204000 Populus trichocarpa HOM05D004849 ORTHO05D005955 7.6e-95 350.5 179 89.9
Potri.010G031900 Populus trichocarpa HOM05D004849 ORTHO05D005955 1.7e-94 349.4 179 89.9
Oeu059240.1 Olea europaea HOM05D004849 ORTHO05D005955 2.2e-94 349.0 179 89.4
Hund12176 Selenicereus undatus HOM05D004849 ORTHO05D005955 2.9e-94 348.6 178 89.9
TWI09G1150 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 2.9e-94 348.6 179 89.9
ClCG05G005350 Citrullus lanatus HOM05D004849 ORTHO05D005955 4.9e-94 347.8 179 89.9
Gohir.A09G213680 Gossypium hirsutum HOM05D004849 ORTHO05D005955 4.9e-94 347.8 179 89.9
Gohir.D09G216000 Gossypium hirsutum HOM05D004849 ORTHO05D005955 4.9e-94 347.8 179 89.9
Gorai.006G236400 Gossypium raimondii HOM05D004849 ORTHO05D005955 4.9e-94 347.8 179 89.9
QL06p003788 Quercus lobata HOM05D004849 ORTHO05D005955 4.9e-94 347.8 179 88.3
Sc13g0004120 Simmondsia chinensis HOM05D004849 ORTHO05D005955 4.9e-94 347.8 178 90.4
Ciclev10006509m.g Citrus clementina HOM05D004849 ORTHO05D005955 6.4e-94 347.4 179 89.9
Sed0011286 Sechium edule HOM05D004849 ORTHO05D005955 6.4e-94 347.4 179 89.9
CsaV3_3G013600 Cucumis sativus L. HOM05D004849 ORTHO05D005955 8.4e-94 347.1 179 89.4
HanXRQChr16g0508681 Helianthus annuus HOM05D004849 ORTHO05D005955 8.4e-94 347.1 179 89.4
Ah.04g154300 Amaranthus hybridus HOM05D004849 ORTHO05D005955 1.1e-93 346.7 178 89.3
MELO3C006555.2 Cucumis melo HOM05D004849 ORTHO05D005955 1.1e-93 346.7 179 89.4
DCAR_024593 Daucus carota HOM05D000983 ORTHO05D005955 1.4e-93 346.3 179 87.7
ECA236G3497 Erigeron canadensis HOM05D004849 ORTHO05D005955 1.4e-93 346.3 179 89.4
PGR142G0613 Punica granatum HOM05D004849 ORTHO05D005955 1.4e-93 346.3 179 89.4
DCAR_027166 Daucus carota HOM05D004849 ORTHO05D005955 1.9e-93 345.9 179 87.7
Peaxi162Scf00134g02031 Petunia axillaris HOM05D004849 ORTHO05D005955 1.9e-93 345.9 179 88.3
TAR362G1319 Trochodendron aralioides HOM05D004849 ORTHO05D005955 2.4e-93 345.5 179 88.8
Prupe.1G153200 Prunus persica HOM05D004849 ORTHO05D005955 3.2e-93 345.1 179 88.3
Manes.03G182800 Manihot esculenta HOM05D004849 ORTHO05D005955 5.4e-93 344.4 179 88.8
TAR633G1443 Trochodendron aralioides HOM05D004849 ORTHO05D005955 5.4e-93 344.4 179 88.3
CANSAT78G0899 Cannabis sativa HOM05D004849 ORTHO05D005955 7.1e-93 344.0 179 87.7
Thhalv10013467m.g Eutrema salsugineum HOM05D004849 ORTHO05D005955 7.1e-93 344.0 179 88.8
MD16G1186500 Malus domestica HOM05D004849 ORTHO05D005955 7.1e-93 344.0 179 87.2
Thecc.04G224600 Theobroma cacao HOM05D004849 ORTHO05D005955 7.1e-93 344.0 179 88.8
Lj6A574T38 Lonicera japonica HOM05D004849 ORTHO05D005955 9.3e-93 343.6 179 88.3
A03p09400 Brassica napus HOM05D004849 ORTHO05D005955 1.6e-92 342.8 179 87.7
C03p10980 Brassica napus HOM05D004849 ORTHO05D005955 1.6e-92 342.8 179 87.7
BolC3t13567H Brassica oleracea HOM05D004849 ORTHO05D005955 1.6e-92 342.8 179 87.7
BraA03t10258Z Brassica rapa HOM05D004849 ORTHO05D005955 1.6e-92 342.8 179 87.7
Eucgr.H03572 Eucalyptus grandis HOM05D004849 ORTHO05D005955 3.5e-92 341.7 179 88.3
Cpa.g.sc147.13 Carica papaya HOM05D004849 ORTHO05D005955 4.6e-92 341.3 179 86.6
Manes.15G024600 Manihot esculenta HOM05D004849 ORTHO05D005955 6.0e-92 340.9 179 88.3
Aa31LG11G10460 Aethionema arabicum HOM05D004849 ORTHO05D005955 7.9e-92 340.5 179 87.2
Migut.G00304 Erythranthe guttata HOM05D004849 ORTHO05D005955 1.3e-91 339.7 179 87.2
BcaC04g18590 Brassica carinata HOM05D004849 ORTHO05D005955 1.8e-91 339.3 179 86.6
BraA10t44115Z Brassica rapa HOM05D004849 ORTHO05D005955 1.8e-91 339.3 179 86.6
EL10As3g23293 Beta vulgaris HOM05D004849 ORTHO05D005955 2.3e-91 339.0 178 88.2
Duzib151G0519 Durio zibethinus HOM05D004849 ORTHO05D005955 2.3e-91 339.0 179 87.2
Sp6g25195 Schrenkiella parvula HOM05D004849 ORTHO05D005955 2.3e-91 339.0 179 86.6
A10p20450 Brassica napus HOM05D004849 ORTHO05D005955 3.0e-91 338.6 179 86.6
BcaB08g36596 Brassica carinata HOM05D004849 ORTHO05D005955 3.9e-91 338.2 179 86.6
MD13G1185500 Malus domestica HOM05D004849 ORTHO05D005955 3.9e-91 338.2 179 86.0
BolC9t58573H Brassica oleracea HOM05D004849 ORTHO05D005955 5.1e-91 337.8 179 86.6
PSO170G1707 Papaver somniferum HOM05D004849 ORTHO05D005955 6.7e-91 337.4 179 85.5
PSO302G0110 Papaver somniferum HOM05D004849 ORTHO05D005955 6.7e-91 337.4 179 85.5
RcHm_v2.0_Chr4g0417521 Rosa chinensis HOM05D004849 ORTHO05D005955 6.7e-91 337.4 179 87.2
Atru.chr4.2537 Acer truncatum HOM05D004849 ORTHO05D005955 8.7e-91 337.0 181 87.3
MSTRG.4003 Avicennia marina HOM05D004849 ORTHO05D005955 1.1e-90 336.7 179 86.6
COL.COLO4_26630 Corchorus olitorius HOM05D004849 ORTHO05D005955 1.1e-90 336.7 179 86.6
C09p57080 Brassica napus HOM05D004849 ORTHO05D005955 1.5e-90 336.3 179 86.0
Lj6C576T2 Lonicera japonica HOM05D004849 ORTHO05D005955 1.9e-90 335.9 172 89.5
Nn1g02186 Nelumbo nucifera HOM05D004849 ORTHO05D005955 1.9e-90 335.9 178 86.5
Cc03_g03260 Coffea canephora HOM05D004849 ORTHO05D005955 2.5e-90 335.5 179 86.6
Duzib212G0178 Durio zibethinus HOM05D004849 ORTHO05D005955 4.3e-90 334.7 179 87.7
Lsat_1_v5_gn_9_81160 Lactuca sativa HOM05D004849 ORTHO05D005955 4.3e-90 334.7 178 85.4
Actinidia23503 Actinidia chinensis HOM05D004849 ORTHO05D005955 5.6e-90 334.3 204 79.4
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.3e-89 333.2 179 84.9
FAN26G1719 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.3e-89 333.2 179 84.9
FAN22G1365 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.1e-89 332.4 179 84.9
SalBow2G0641 Salvia bowleyana HOM05D004849 ORTHO05D005955 2.8e-89 332.0 179 86.0
SGA_v2.0_scaffold237G43812 Striga asiatica HOM05D004849 ORTHO05D005955 3.6e-89 331.6 179 86.0
AUR62038191 Chenopodium quinoa HOM05D004849 ORTHO05D005955 4.8e-89 331.3 178 85.4
AUR62038065 Chenopodium quinoa HOM05D004849 ORTHO05D005955 6.2e-89 330.9 178 84.8
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 8.1e-89 330.5 179 84.4
FvH4_4g14790 Fragaria vesca HOM05D004849 ORTHO05D005955 8.1e-89 330.5 179 84.9
FAN12G0879 Fragaria x ananassa HOM05D004849 ORTHO05D005955 8.1e-89 330.5 179 84.9
FvH4_1g25030 Fragaria vesca HOM05D004849 ORTHO05D005955 3.1e-88 328.6 179 84.9
Lalb_Chr18g0056171 Lupinus albus HOM05D004849 ORTHO05D005955 4.0e-88 328.2 179 84.4
arahy.Tifrunner.gnm1.ann1.75KEF6 Arachis hypogaea HOM05D004849 ORTHO05D005955 9.0e-88 327.0 179 83.2
arahy.Tifrunner.gnm1.ann1.U1U343 Arachis hypogaea HOM05D004849 ORTHO05D005955 9.0e-88 327.0 179 83.2
CARHR193770 Cardamine hirsuta HOM05D004849 ORTHO05D005955 1.5e-87 326.2 179 84.4
Ca_21102_v3 Cicer arietinum L. HOM05D004849 ORTHO05D005955 1.5e-87 326.2 179 83.2
Aqoxy2G03291 Aquilegia oxysepala HOM05D004849 ORTHO05D005955 2.0e-87 325.9 209 74.6
Phvul.003G091500 Phaseolus vulgaris HOM05D004849 ORTHO05D005955 2.0e-87 325.9 179 83.2
Medtr4g131690 Medicago truncatula HOM05D004849 ORTHO05D005955 2.6e-87 325.5 179 83.8
Glyma.07G258000 Glycine max HOM05D004849 ORTHO05D005955 3.4e-87 325.1 179 83.2
Lj4g0022520 Lotus japonicus HOM05D004849 ORTHO05D005955 3.4e-87 325.1 179 82.7
VMungo1215G1989 Vigna mungo HOM05D004849 ORTHO05D005955 3.4e-87 325.1 179 83.2
Zm00001eb332890 Zea mays HOM05D004849 ORTHO05D005955 4.5e-87 324.7 178 82.0
AL6G30630 Arabidopsis lyrata HOM05D004849 ORTHO05D005955 7.6e-87 323.9 179 83.2
Lalb_Chr20g0118511 Lupinus albus HOM05D004849 ORTHO05D005955 7.6e-87 323.9 176 84.1
ATR0626G348 Amborella trichopoda HOM05D004849 ORTHO05D005955 1.3e-86 323.2 178 83.7
FAN19G3009 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.3e-86 323.2 179 83.2
Glyma.17G016000 Glycine max HOM05D004849 ORTHO05D005955 1.7e-86 322.8 179 82.1
AT5G19180 Arabidopsis thaliana HOM05D004849 ORTHO05D005955 2.2e-86 322.4 179 82.7
unitig_748.g8344 Utricularia gibba HOM05D004849 ORTHO05D005955 3.8e-86 321.6 181 83.4
Os01g0271500 Oryza sativa ssp. japonica HOM05D004849 ORTHO05D005955 7.9e-84 313.9 178 78.7
SEGI_19294 Sequoiadendron giganteum HOM05D004849 ORTHO05D005955 1.5e-82 309.7 179 78.2
BcaB01g04873 Brassica carinata HOM05D004849 ORTHO05D005955 1.8e-80 302.8 179 79.9
BcaB01g05137 Brassica carinata HOM05D004849 ORTHO05D005955 2.4e-80 302.4 179 80.4
Sed0000406 Sechium edule HOM05D004849 ORTHO05D005955 3.3e-74 282.0 143 93.0
Eucgr.H03570 Eucalyptus grandis HOM05D004849 ORTHO05D005955 1.3e-73 280.0 179 77.1
MSTRG.10007 Avicennia marina HOM05D004849 ORTHO05D005955 5.3e-72 274.6 145 87.6
TPR.G37111 Trifolium pratense HOM05D004849 ORTHO05D005955 2.0e-71 272.7 146 87.7
HPP92_001335 Vanilla planifolia HOM05D004849 ORTHO05D005955 3.4e-71 271.9 143 88.1
SMO141G0184 Selaginella moellendorffii HOM05D004849 ORTHO05D005955 4.5e-71 271.6 179 65.4
SHI00393 Sapria himalayana HOM05D004849 ORTHO05D005955 8.5e-70 267.3 178 73.6
Psat4g008440 Pisum sativum HOM05D004849 ORTHO05D005955 2.5e-69 265.8 145 86.2
Mapoly0032s0081 Marchantia polymorpha HOM05D004849 ORTHO05D005955 1.8e-67 259.6 178 63.5
PRCOL_00002962 Prasinoderma coloniale HOM05D004849 ORTHO05D005955 6.7e-67 257.7 179 63.7
CDE11G0641 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 1.9e-66 256.1 176 71.0
Pp3c21_10350 Physcomitrium patens HOM05D004849 ORTHO05D005955 3.3e-66 255.4 179 61.5
Cre12.g491500 Chlamydomonas reinhardtii HOM05D004849 ORTHO05D005955 4.8e-65 251.5 176 65.3
MCO07G571 Micromonas commoda HOM05D004849 ORTHO05D005955 2.2e-62 242.7 175 60.6
Pp3c19_5590 Physcomitrium patens HOM05D004849 ORTHO05D005955 5.0e-62 241.5 179 58.7
CBR_g30851 Chara braunii HOM05D004849 ORTHO05D005955 2.0e-55 219.5 179 57.5
QL05p054428 Quercus lobata HOM05D004849 ORTHO05D005955 7.2e-53 211.1 103 88.3
Nitab4.5_0000630g0030 Nicotiana tabacum HOM05D004849 ORTHO05D005955 1.2e-42 177.2 113 78.8
Haze_27108 Corylus avellana HOM05D004849 ORTHO05D005955 5.7e-42 174.9 170 44.7
Oeu030323.1 Olea europaea HOM05D004849 ORTHO05D005955 3.6e-36 155.6 164 51.2
RcHm_v2.0_Chr1g0343821 Rosa chinensis HOM05D004849 ORTHO05D005955 1.1e-32 144.1 72 86.1
AagrBONN_evm.TU.Sc2ySwM_368.1673 Anthoceros agrestis HOM05D004849 ORTHO05D005955 1.4e-32 143.7 84 70.2
RcHm_v2.0_Chr1g0328651 Rosa chinensis HOM05D004849 ORTHO05D005955 6.5e-30 134.8 72 81.9
FAN17G1787 Fragaria x ananassa HOM05D004849 ORTHO05D005955 3.3e-21 105.9 248 32.7
SalBow8G2518 Salvia bowleyana HOM05D004849 ORTHO05D005955 2.4e-16 89.7 77 63.6
FAN03G2641 Fragaria x ananassa HOM05D001971 ORTHO05D029608 2.7e-15 86.3 62 67.7
FAN10G1946 Fragaria x ananassa HOM05D001971 ORTHO05D029608 2.7e-15 86.3 62 67.7
Zm00001eb343560 Zea mays HOM05D005945 ORTHO05D006749 3.3e-13 79.3 65 58.5
Duzib248G1279 Durio zibethinus HOM05D004318 ORTHO05D005690 4.4e-10 68.9 172 27.3
Nitab4.5_0012513g0010 Nicotiana tabacum HOM05D004849 ORTHO05D005955 7.0e-08 61.6 33 75.8
Cre06.g296983 Chlamydomonas reinhardtii HOM05D004318 ORTHO05D005690 1.2e-07 60.8 114 33.3
Zm00001eb346970 Zea mays HOM05D004849 ORTHO05D443254 3.5e-07 59.3 43 55.8
FvH4_2g09750 Fragaria vesca HOM05D004318 ORTHO05D005690 3.0e-06 56.2 141 27.7
FAN20G2962 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.0e-06 56.2 141 27.7
FAN24G0421 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.0e-06 56.2 141 27.7
FAN27G0594 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.0e-06 56.2 141 27.7
FAN24G3142 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.9e-06 55.8 141 27.7
FAN15G3707 Fragaria x ananassa HOM05D004318 ORTHO05D005690 5.0e-06 55.5 141 27.7
Hma1.2p1_0851F.1_g228380 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 5.0e-06 55.5 123 26.8
Cfa025508 Carpinus fangiana HOM05D004318 ORTHO05D005690 6.6e-06 55.1 76 35.5


User provided reference genes

Program Settings