Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 2008.8 997 100.0
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1736.9 998 85.6
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1718.7 996 85.3
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1716.4 996 85.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1699.1 995 83.3
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1693.7 997 84.0
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 994 82.7
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1667.9 1024 80.5
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1631.7 994 79.7
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1602.0 1002 78.8
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1598.9 1000 78.6
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 992 77.6
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1577.4 1005 76.9
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 1000 76.9
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 999 76.9
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1555.4 1001 77.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1555.0 1007 75.9
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1554.7 1000 76.4
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1553.5 993 75.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1553.1 996 76.4
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 995 76.2
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1552.3 991 76.5
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1000 76.6
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1549.3 996 75.7
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1002 75.7
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 996 76.8
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1546.6 1022 75.0
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1546.2 996 75.4
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 1002 75.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 996 75.4
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1543.1 1002 75.3
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 994 76.1
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 995 76.8
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 996 76.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1538.1 994 76.5
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1002 74.8
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 999 75.6
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1531.2 1000 75.8
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1529.6 1005 75.4
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1002 74.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 994 74.0
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1005 74.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1002 75.1
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 995 75.9
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1525.0 1000 75.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1525.0 995 74.4
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1524.2 994 75.3
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 1000 74.8
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 995 75.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1521.9 1004 73.8
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1520.8 1001 73.9
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1520.4 1002 73.8
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1520.0 1000 75.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 999 74.6
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 1002 74.2
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1518.4 999 73.8
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1517.3 1002 74.3
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1516.1 996 74.3
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1516.1 993 75.1
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1514.2 986 75.7
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1513.8 998 73.7
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1512.3 995 75.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1510.0 1007 72.4
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1506.1 1002 73.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1506.1 1002 73.4
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1506.1 1002 74.2
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1504.2 1001 74.0
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1501.9 996 74.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1494.2 1001 73.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1491.1 1003 73.5
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1486.5 993 73.4
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1486.5 993 73.4
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 993 73.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1481.8 1002 73.3
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1481.5 1004 72.2
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1480.3 993 72.8
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1479.2 993 72.8
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1478.8 1004 72.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1478.4 1000 72.3
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1478.0 1004 72.1
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1476.8 993 73.1
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1476.8 993 73.1
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1476.1 999 72.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1475.7 993 73.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1475.7 929 77.9
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1475.3 993 72.7
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1474.9 994 72.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 996 73.0
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 1063 68.9
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1471.1 996 73.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1470.3 992 72.6
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1468.8 1003 72.6
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1467.6 1002 72.5
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1467.2 994 71.0
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 994 72.0
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1465.3 1002 72.4
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1462.2 993 71.3
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1452.2 996 71.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1446.0 999 71.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1436.4 993 69.6
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1430.2 994 73.4
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1429.8 994 70.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1429.8 967 71.8
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1416.0 993 69.6
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1399.4 1020 68.9
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1394.4 998 70.6
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1391.3 994 70.0
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1384.4 897 75.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1373.6 1004 68.3
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1371.3 913 74.8
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1366.7 994 67.0
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1215.3 709 84.8
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1145.6 709 79.0
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1144.4 755 74.3
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1122.5 998 54.6
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1110.5 997 54.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1090.1 1039 52.0
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1082.8 607 88.1
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1078.2 1002 52.2
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1075.8 589 89.3
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 6.8e-310 1067.4 997 52.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.0e-293 1012.7 836 59.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.2e-255 887.1 735 63.0
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.8e-252 875.5 953 48.2
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 4.5e-237 825.5 531 76.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-234 817.0 631 64.3
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 6.3e-223 778.5 602 68.1
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.2e-213 747.7 407 87.5
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 8.5e-212 741.5 891 49.5
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 5.4e-182 642.5 605 55.0
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.0e-169 600.1 434 70.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.1e-133 481.1 312 74.4
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 3.5e-133 480.3 381 64.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.8e-119 433.7 221 91.0
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 6.7e-76 290.0 290 52.1
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.5e-67 260.0 205 63.9
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 2.1e-61 241.9 237 52.3
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 3.4e-59 234.6 127 81.9
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 6.2e-37 160.6 133 57.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 4.0e-36 157.9 162 54.3
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.0e-31 141.7 73 87.7
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 3.3e-30 138.3 88 78.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.3e-30 138.3 156 49.4
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 6.4e-26 124.0 97 63.9
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 3.5e-24 118.2 104 52.9
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 4.7e-21 107.8 57 80.7
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 2.5e-14 85.5 47 87.2
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.0e-12 78.2 49 67.3
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.2e-09 68.6 33 93.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 7.1e-09 67.4 123 38.2
GSVIVG01023118001 Vitis vinifera HOM05D002380 ORTHO05D440244 8.7e-07 60.5 50 64.0
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.1e-06 60.1 39 71.8


User provided reference genes

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