Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 3.4e-286 987.6 493 100.0
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.6e-208 729.6 463 82.1
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 6.6e-157 558.1 522 61.1
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.7e-141 506.9 489 57.7
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.2e-135 486.1 479 58.0
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.1e-135 485.7 489 57.9
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.9e-132 476.9 468 56.8
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.6e-131 473.8 486 57.4
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 5.2e-130 468.8 486 57.0
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.3e-128 464.2 489 56.9
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.7e-126 456.4 487 55.0
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 7.8e-126 454.9 494 53.8
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.6e-121 439.9 463 53.1
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 8.4e-120 434.9 471 54.1
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.4e-119 433.3 488 52.3
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.0e-117 427.9 487 50.5
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.5e-116 424.1 486 52.3
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.5e-116 424.1 464 51.5
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.6e-113 413.3 475 51.6
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 3.2e-111 406.4 487 49.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.2e-111 406.4 488 50.6
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 4.2e-111 406.0 467 51.4
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.1e-110 403.7 476 49.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 3.9e-109 399.4 488 51.2
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.3e-108 396.4 465 50.1
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 2.8e-107 393.3 478 47.5
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.2e-107 392.1 484 51.4
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 8.1e-107 391.7 466 49.1
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.4e-103 380.9 480 48.3
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.2e-103 379.8 459 47.5
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.2e-103 379.4 458 50.4
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 9.3e-103 378.3 488 47.7
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.3e-101 373.6 469 50.3
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 3.9e-101 372.9 486 47.7
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.5e-100 370.2 476 46.6
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 9.6e-100 368.2 452 50.0
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.6e-99 367.5 463 46.9
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.6e-99 367.5 463 46.9
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 6.2e-99 365.5 458 49.6
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.4e-98 363.6 451 50.1
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.0e-98 362.8 489 45.6
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.0e-98 361.7 494 45.5
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 2.0e-97 360.5 484 47.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.5e-97 359.4 471 47.1
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.9e-95 354.0 453 48.1
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 3.2e-95 353.2 445 47.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 2.1e-94 350.5 493 47.1
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 1.6e-91 340.9 483 44.9
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 5.3e-90 335.9 443 47.4
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 5.0e-88 329.3 460 43.3
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 4.6e-86 322.8 473 45.2
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-83 314.7 446 44.2
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.1e-82 311.6 473 43.3
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 8.8e-77 292.0 448 44.4
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.1e-76 291.6 392 46.2
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.7e-75 287.7 390 45.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.3e-69 267.3 454 38.1
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 6.7e-69 265.8 324 49.7
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 4.4e-68 263.1 455 36.7
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 2.5e-63 247.3 467 35.5
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 6.8e-61 239.2 448 36.6
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.8e-58 231.1 452 34.7
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.5e-57 226.9 472 35.2
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.1e-55 221.9 454 33.0
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.5e-55 220.7 171 66.7
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.2e-55 220.3 454 33.5
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 4.2e-55 219.9 438 36.1
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 7.2e-55 219.2 460 33.9
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.4e-53 214.9 458 34.1
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 6.8e-53 212.6 222 52.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 8.8e-53 212.2 347 43.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 4.4e-52 209.9 455 35.4
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 7.5e-52 209.1 499 31.1
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.4e-50 204.9 472 33.9
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.4e-50 204.1 472 33.9
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 9.1e-50 202.2 453 32.2
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 2.0e-49 201.1 462 31.2
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.0e-49 201.1 405 35.1
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.0e-49 201.1 453 31.6
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.7e-49 200.7 453 32.0
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 7.7e-49 199.1 453 31.8
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 7.7e-49 199.1 453 31.8
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.0e-48 198.7 448 31.2
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 8.6e-48 195.7 454 34.8
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.1e-47 195.3 440 32.0
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.1e-47 195.3 491 31.0
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 9.5e-47 192.2 449 31.0
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.6e-46 191.4 417 32.9
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.6e-46 190.3 455 31.6
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 8.0e-46 189.1 455 31.9
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.2e-44 185.3 427 33.5
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.4e-44 183.7 176 51.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.7e-43 181.4 391 32.2
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.4e-42 177.6 450 33.1
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.1e-39 168.7 242 44.2
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.9e-39 167.9 448 29.2
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 4.3e-39 166.8 380 33.2
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.1e-38 164.5 350 35.1
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 3.6e-38 163.7 370 33.0
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.8e-37 161.4 169 47.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 4.0e-37 160.2 369 33.6
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 5.2e-37 159.8 463 29.4
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.6e-36 157.5 353 31.2
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 5.8e-36 156.4 435 32.2
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 8.3e-35 152.5 163 48.5
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.1e-34 152.1 377 31.0
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.4e-34 151.0 162 43.8
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.2e-34 150.6 406 30.8
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 6.0e-33 146.4 109 62.4
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.5e-31 141.0 436 28.2
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 3.3e-31 140.6 379 28.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.6e-31 139.8 142 47.9
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 7.3e-31 139.4 436 28.2
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.2e-30 138.7 382 28.8
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.6e-30 138.3 383 30.3
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 2.1e-30 137.9 365 31.0
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.6e-30 137.1 390 29.7
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.7e-30 136.7 392 30.1
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 8.3e-27 125.9 162 39.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 6.0e-25 119.8 380 30.3
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.3e-24 117.9 262 37.0
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 3.0e-24 117.5 130 48.5
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 8.6e-24 115.9 130 47.7
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.9e-23 114.8 382 27.7
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 1.2e-22 112.1 70 74.3
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.2e-22 112.1 372 27.7
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 4.0e-21 107.1 137 50.4
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 2.0e-20 104.8 148 37.2
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 3.4e-20 104.0 78 69.2
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.3e-19 102.1 314 29.3
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.3e-19 102.1 314 29.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 6.4e-19 99.8 295 27.8
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.4e-18 97.8 161 39.1
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.4e-18 97.8 383 28.7
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.4e-18 97.8 419 24.6
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.2e-18 97.4 121 39.7
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.4e-18 96.7 138 44.9
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-17 95.1 133 37.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.6e-17 95.1 419 25.8
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 2.7e-17 94.4 123 44.7
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.7e-16 91.7 104 44.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.9e-16 90.5 172 34.3
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 8.6e-16 89.4 159 36.5
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 5.4e-10 70.1 67 50.7
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 3.5e-09 67.4 100 33.0
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.1e-06 58.2 74 40.5


User provided reference genes

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