Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 9.1e-170 600.1 298 100.0
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 5.4e-37 159.1 272 42.6
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 6.4e-22 109.0 279 35.1
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.4e-21 107.8 277 35.7
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 1.1e-16 91.7 94 55.3
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 4.0e-16 89.7 101 56.4
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 6.8e-16 89.0 91 51.6
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 2.6e-15 87.0 94 52.1
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 5.8e-15 85.9 93 54.8
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 2.9e-14 83.6 91 54.9
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 2.9e-14 83.6 100 52.0
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 2.9e-14 83.6 92 50.0
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 4.9e-14 82.8 95 53.7
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 8.3e-14 82.0 79 57.0
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 1.1e-13 81.6 97 49.5
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 1.1e-13 81.6 112 47.3
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 1.4e-13 81.3 89 52.8
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.4e-13 80.5 134 44.8
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.4e-13 80.5 78 57.7
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 5.4e-13 79.3 95 47.4
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 5.4e-13 79.3 90 51.1
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 9.2e-13 78.6 88 52.3
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 9.2e-13 78.6 65 61.5
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 2.1e-12 77.4 95 47.4
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 3.5e-12 76.6 97 49.5
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 4.6e-12 76.3 89 51.7
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 6.0e-12 75.9 63 63.5
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 6.0e-12 75.9 63 63.5
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 6.0e-12 75.9 52 75.0
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.8e-12 75.5 88 51.1
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 1.0e-11 75.1 93 49.5
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 1.0e-11 75.1 93 50.5
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 1.3e-11 74.7 94 50.0
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 1.3e-11 74.7 81 53.1
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 5.1e-11 72.8 103 48.5
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 5.1e-11 72.8 99 46.5
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 5.1e-11 72.8 91 47.3
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 5.1e-11 72.8 69 53.6
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 6.6e-11 72.4 54 70.4
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 6.6e-11 72.4 69 53.6
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.1e-10 71.6 96 50.0
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 1.1e-10 71.6 79 53.2
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.5e-10 70.5 75 52.0
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 7.3e-10 68.9 89 50.6
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 7.3e-10 68.9 77 50.6
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 7.3e-10 68.9 97 47.4
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 9.5e-10 68.6 92 45.7
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 9.5e-10 68.6 93 44.1
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.2e-09 68.2 61 59.0
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.2e-09 68.2 61 59.0
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 1.6e-09 67.8 127 40.2
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.6e-09 67.8 97 45.4
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 2.1e-09 67.4 75 50.7
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.1e-09 67.4 75 50.7
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 2.1e-09 67.4 53 64.2
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 3.6e-09 66.6 80 50.0
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.6e-09 66.6 93 50.5
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.7e-09 66.2 51 62.7
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 4.7e-09 66.2 51 62.7
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 6.2e-09 65.9 81 48.1
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 8.1e-09 65.5 60 65.0
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 1.8e-08 64.3 103 39.8
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 1.8e-08 64.3 96 47.9
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 2.3e-08 63.9 65 55.4
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 3.1e-08 63.5 54 61.1
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 4.0e-08 63.2 95 41.1
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 5.2e-08 62.8 95 43.2
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 5.2e-08 62.8 70 52.9
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 5.2e-08 62.8 70 52.9
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 5.2e-08 62.8 86 47.7
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 5.2e-08 62.8 65 49.2
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 6.8e-08 62.4 51 58.8
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 8.9e-08 62.0 44 65.9
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 8.9e-08 62.0 44 65.9
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 8.9e-08 62.0 44 65.9
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 1.5e-07 61.2 82 43.9
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 1.5e-07 61.2 82 43.9
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 3.4e-07 60.1 68 51.5
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 3.4e-07 60.1 68 51.5
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 4.4e-07 59.7 51 56.9
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 4.4e-07 59.7 51 56.9
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 4.4e-07 59.7 51 56.9
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 4.4e-07 59.7 46 60.9
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 4.4e-07 59.7 67 49.3
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 4.4e-07 59.7 115 39.1
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 4.4e-07 59.7 72 45.8
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 7.6e-07 58.9 100 42.0
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 9.9e-07 58.5 48 58.3
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 2.2e-06 57.4 79 43.0
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.9e-06 57.0 80 46.2
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 2.9e-06 57.0 108 43.5
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 3.8e-06 56.6 56 48.2


User provided reference genes

Program Settings