Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.3e-216 756.1 392 100.0
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.1e-194 683.3 389 90.7
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.4e-170 603.2 388 79.9
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.7e-168 596.3 388 81.4
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.0e-168 594.7 386 79.0
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.3e-165 585.9 388 77.1
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.6e-164 582.4 388 76.5
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 5.8e-164 581.3 388 76.8
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.7e-163 579.7 388 76.3
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.9e-163 578.9 388 77.3
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 3.7e-163 578.6 388 76.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 5.4e-162 574.7 388 78.9
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 7.0e-162 574.3 388 76.5
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 2.0e-161 572.8 387 76.2
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 3.5e-161 572.0 388 76.3
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.5e-159 566.6 388 75.8
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.5e-159 566.6 385 74.8
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.9e-159 566.2 388 74.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.3e-159 564.3 388 74.2
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.2e-158 563.5 388 74.7
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.1e-157 560.5 388 74.5
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.8e-157 559.7 385 74.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.8e-157 559.7 385 74.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.3e-157 559.3 388 74.2
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.1e-157 558.9 388 74.7
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 3.1e-157 558.9 385 75.1
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 4.0e-157 558.5 387 74.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.5e-156 556.6 389 72.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.5e-156 556.6 387 73.4
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.0e-156 556.2 389 74.6
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 3.4e-156 555.4 389 74.6
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.2e-155 552.7 389 74.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.9e-155 552.4 388 74.0
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 8.3e-155 550.8 384 74.0
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 8.3e-155 550.8 390 73.3
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.1e-154 550.4 390 72.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 74.5
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 74.5
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 73.2
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 9.2e-154 547.4 388 72.7
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.2e-154 547.4 385 73.2
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.5e-153 545.4 388 72.2
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.3e-152 543.5 406 69.5
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.7e-152 543.1 388 71.9
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.3e-152 542.7 344 81.7
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.1e-151 540.4 390 72.6
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.1e-151 540.4 383 72.6
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.9e-151 539.7 361 78.9
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.9e-151 539.7 384 72.7
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 4.3e-151 538.5 385 72.5
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 7.3e-151 537.7 385 72.5
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 3.6e-150 535.4 384 72.9
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.7e-150 535.0 402 69.9
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 6.2e-150 534.6 388 71.4
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.1e-149 533.9 389 71.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.1e-149 533.9 389 70.7
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.8e-149 533.1 389 72.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 5.2e-149 531.6 388 71.1
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 2.6e-148 529.3 391 70.8
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 7.6e-148 527.7 385 69.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.9e-148 527.3 388 71.4
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.9e-148 527.3 388 70.9
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.7e-147 526.6 386 70.7
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.7e-147 526.6 388 71.1
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 2.2e-147 526.2 389 71.2
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.9e-146 523.1 385 70.1
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-146 522.7 388 71.4
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 2.4e-146 522.7 393 70.7
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.2e-145 520.4 385 70.1
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 7.8e-145 517.7 385 69.4
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.7e-144 516.5 384 70.1
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.7e-144 516.5 388 69.6
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 5.1e-144 515.0 390 69.2
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-143 513.5 420 66.7
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.9e-143 513.1 389 69.2
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.5e-143 512.7 386 70.7
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.3e-143 512.3 420 66.2
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.1e-141 505.8 420 66.0
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.0e-141 505.4 420 66.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.3e-139 500.4 414 64.7
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.8e-139 498.8 389 68.9
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.1e-138 497.3 385 67.8
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.4e-138 496.1 388 67.3
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.4e-138 496.1 349 73.9
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 5.4e-138 495.0 386 67.4
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 7.1e-138 494.6 386 67.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.1e-137 493.0 386 66.8
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.7e-137 492.7 387 66.4
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.7e-137 492.7 386 66.8
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.7e-137 492.7 385 68.1
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 4.6e-137 491.9 386 67.6
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 6.0e-137 491.5 386 67.1
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 6.0e-137 491.5 388 64.9
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 6.0e-137 491.5 386 67.1
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 3.0e-136 489.2 386 66.3
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.1e-135 487.3 388 66.2
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.1e-135 487.3 350 72.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.5e-135 486.1 387 66.9
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.5e-135 486.1 387 66.9
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.3e-134 483.8 388 66.0
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.8e-134 482.6 356 71.3
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.8e-133 479.9 388 65.5
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 3.1e-133 479.2 386 66.6
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.1e-133 479.2 388 65.5
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.2e-132 477.2 386 66.6
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.9e-131 472.6 387 63.6
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 8.4e-131 471.1 386 65.8
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.6e-129 466.8 386 65.0
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 3.9e-128 462.2 386 64.8
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-124 450.3 407 60.9
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 2.0e-124 449.9 337 68.2
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.8e-123 445.7 386 62.7
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.5e-122 441.8 390 61.8
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 2.3e-120 436.4 394 59.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 3.3e-119 432.6 389 59.9
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 3.3e-119 432.6 390 59.7
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.6e-118 430.3 388 60.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 5.3e-117 425.2 379 59.9
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.2e-116 424.1 399 57.1
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.1e-113 413.3 399 56.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 4.1e-109 399.1 385 57.7
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.2e-102 376.7 385 56.1
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.6e-97 360.5 301 59.1
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.1e-95 354.4 413 50.4
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.4e-92 342.8 272 66.5
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 8.5e-91 338.2 438 45.4
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.6e-89 334.0 229 74.2
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.1e-82 311.2 370 48.6
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.2e-81 307.8 298 59.7
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.0e-80 304.7 266 61.3
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.2e-71 274.6 387 42.9
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 8.6e-67 258.5 467 37.3
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.8e-62 243.4 164 77.4
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.2e-53 211.8 142 76.8
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.9e-51 206.5 244 47.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.1e-48 196.8 150 72.7
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.3e-46 191.4 173 62.4
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.9e-37 161.0 127 66.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.3e-34 150.2 403 29.3
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 9.2e-29 132.1 78 82.1
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.6e-28 131.3 88 73.9
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-28 130.6 150 54.7
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 6.0e-28 129.4 108 61.1
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 3.9e-27 126.7 156 52.6
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 2.8e-25 120.6 181 41.4
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.1e-25 119.0 213 38.0
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-24 117.9 139 55.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.9e-22 110.5 121 56.2
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 3.9e-19 100.1 83 62.7
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.3e-18 95.9 128 52.3
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 2.8e-17 94.0 128 52.3
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-16 91.7 83 59.0
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 4.0e-16 90.1 86 55.8
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-14 84.7 124 48.4
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 7.1e-13 79.3 106 45.3
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 9.3e-13 79.0 44 90.9
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 6.0e-12 76.3 51 68.6
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 3.9e-11 73.6 91 45.1
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 8.7e-11 72.4 99 46.5
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 9.6e-10 68.9 42 83.3
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.1e-09 67.8 51 62.7
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-07 62.0 100 41.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 5.8e-07 59.7 36 83.3
CBR_g19142 Chara braunii HOM05D007151 ORTHO05D009056 1.3e-06 58.5 94 34.0
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.9e-06 57.4 38 76.3
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 4.9e-06 56.6 52 61.5


User provided reference genes

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