Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 5.2e-215 750.7 371 100.0
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 8.1e-184 647.1 364 85.7
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.1e-154 548.1 363 72.7
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 8.4e-149 530.8 364 69.0
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.8e-138 496.5 365 67.4
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.0e-133 480.7 347 67.4
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.0e-125 454.1 365 59.7
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 3.8e-125 452.2 365 61.1
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 2.5e-124 449.5 366 61.5
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 7.2e-124 448.0 365 58.6
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.2e-123 447.2 365 60.8
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 4.7e-123 445.3 365 59.7
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 8.0e-123 444.5 365 58.4
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 4.0e-122 442.2 365 57.8
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.5e-121 440.3 365 59.5
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 6.3e-120 434.9 365 58.6
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 3.1e-119 432.6 365 58.9
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 4.5e-118 428.7 365 55.6
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 5.9e-118 428.3 351 60.1
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 7.7e-118 427.9 364 56.3
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 2.2e-117 426.4 365 55.9
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 3.8e-117 425.6 364 55.8
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 8.5e-117 424.5 365 57.8
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.1e-116 424.1 365 56.4
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.9e-116 423.3 366 57.7
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.5e-116 422.9 368 57.3
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 3.2e-116 422.5 367 56.9
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 4.2e-116 422.2 367 56.7
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 7.2e-116 421.4 365 57.3
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 9.4e-116 421.0 365 55.6
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 8.0e-115 417.9 365 57.3
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.0e-114 417.5 364 55.2
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 4.0e-114 415.6 365 56.2
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 4.0e-114 415.6 365 56.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.5e-113 413.7 365 57.0
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.0e-113 413.3 373 56.3
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 2.0e-113 413.3 366 56.8
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 5.7e-113 411.8 367 57.2
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 7.5e-113 411.4 365 56.4
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.3e-112 410.6 373 55.8
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.7e-112 410.2 362 56.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.2e-112 409.8 365 55.3
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 4.8e-112 408.7 367 55.9
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 1.4e-111 407.1 369 55.8
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 1.8e-111 406.8 365 55.3
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.8e-111 406.8 370 55.1
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 2.4e-111 406.4 367 55.0
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.1e-111 406.0 365 55.3
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.4e-111 405.2 364 55.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 7.0e-111 404.8 365 54.8
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.6e-110 403.7 367 55.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 4.5e-110 402.1 367 55.3
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.1e-108 397.5 365 54.5
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.5e-108 397.1 365 54.2
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.9e-108 396.7 348 57.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.5e-108 396.4 365 54.0
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 3.2e-108 396.0 365 54.5
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.6e-107 393.7 365 54.0
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 2.7e-107 392.9 369 52.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.0e-106 391.0 367 54.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.4e-106 390.6 375 55.2
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.3e-106 389.8 370 52.2
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.2e-104 383.3 366 53.0
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.8e-104 382.9 361 54.3
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 3.7e-104 382.5 365 51.0
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 4.9e-104 382.1 368 53.0
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 2.4e-103 379.8 365 52.1
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.6e-102 377.1 366 52.5
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 1.3e-101 374.0 365 49.9
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.7e-101 373.6 367 49.9
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.9e-101 372.9 365 51.0
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 3.8e-101 372.5 367 50.7
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.1e-100 370.9 364 51.1
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.9e-100 370.2 365 52.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 4.3e-100 369.0 366 48.9
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.6e-99 367.1 368 50.5
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 5.2e-98 362.1 370 48.9
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.6e-97 359.8 366 48.6
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 7.5e-97 358.2 361 47.6
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 7.5e-97 358.2 374 49.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 9.8e-97 357.8 360 48.6
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 9.8e-97 357.8 362 48.9
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 2.2e-96 356.7 362 48.3
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 3.7e-96 355.9 362 48.6
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 3.7e-96 355.9 362 48.6
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 8.3e-96 354.8 360 48.3
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.6e-94 350.5 362 47.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 3.0e-93 346.3 379 45.9
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 8.6e-93 344.7 363 46.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.3e-92 342.4 374 45.7
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.3e-90 336.7 328 50.9
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.0e-89 333.6 375 47.5
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.3e-88 330.9 374 45.5
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.9e-87 327.0 259 59.5
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 5.2e-82 308.9 243 58.8
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.2e-78 297.7 360 43.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.6e-65 253.4 376 37.0
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.6e-65 251.9 365 40.8
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.7e-64 250.8 381 38.1
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 7.1e-63 245.4 260 49.2
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 2.9e-56 223.4 191 53.9
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 2.4e-50 203.8 167 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 6.9e-42 175.6 393 32.1
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 7.6e-41 172.2 361 30.7
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.6e-38 164.5 160 53.1
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.1e-38 164.1 373 28.4
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.2e-33 148.3 371 28.0
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.5e-33 147.9 102 68.6
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.5e-33 146.4 312 33.0
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.7e-27 126.7 402 26.9
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 4.8e-27 126.3 377 27.3
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.4e-26 124.8 420 27.1
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 4.5e-25 119.8 98 61.2
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 6.5e-24 115.9 105 51.4
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.2e-22 111.7 352 25.6
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-21 108.2 106 50.9
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.7e-21 105.9 79 60.8
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.3e-20 103.6 79 58.2
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.8e-18 97.8 147 40.8
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.0e-12 77.8 146 36.3
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.3e-10 69.7 69 42.0


User provided reference genes

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