Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19536 Vaccinium macrocarpon HOM05D000049 ORTHO05D011980 8.7e-50 199.9 95 100.0
vmacro17827 Vaccinium macrocarpon HOM05D000049 ORTHO05D000027 1.3e-16 89.7 48 89.6
Rhsim08G0117800 Rhododendron simsii HOM05D000049 ORTHO05D000027 2.8e-16 88.6 46 91.3
COL.COLO4_24893 Corchorus olitorius HOM05D000049 ORTHO05D000027 6.3e-16 87.4 46 89.1
TWI09G0572 Tripterygium wilfordii HOM05D000049 ORTHO05D000027 8.3e-16 87.0 61 75.4
Eucgr.D02615 Eucalyptus grandis HOM05D000049 ORTHO05D000027 1.8e-15 85.9 46 87.0
Duzib187G0891 Durio zibethinus HOM05D000049 ORTHO05D000027 2.4e-15 85.5 46 84.8
FvH4_5g30040 Fragaria vesca HOM05D000049 ORTHO05D000027 2.4e-15 85.5 61 72.1
Gohir.A02G165900 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.4e-15 85.5 46 84.8
Gohir.A11G184201 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.4e-15 85.5 46 84.8
Prupe.8G270100 Prunus persica HOM05D000049 ORTHO05D000027 2.4e-15 85.5 46 87.0
Thecc.01G034800 Theobroma cacao HOM05D000049 ORTHO05D000027 2.4e-15 85.5 46 84.8
Atru.chr12.876 Acer truncatum HOM05D000049 ORTHO05D000027 4.1e-15 84.7 46 84.8
CSS0005450 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D000027 4.1e-15 84.7 46 84.8
Ciclev10032495m.g Citrus clementina HOM05D000049 ORTHO05D000027 4.1e-15 84.7 46 84.8
Glyma.01G176300 Glycine max HOM05D000049 ORTHO05D000027 4.1e-15 84.7 46 84.8
Glyma.11G068500 Glycine max HOM05D000049 ORTHO05D000027 4.1e-15 84.7 46 84.8
Phvul.002G030600 Phaseolus vulgaris HOM05D000049 ORTHO05D000027 4.1e-15 84.7 46 84.8
Sabra07G0021900 Salix brachista HOM05D000049 ORTHO05D000027 4.1e-15 84.7 46 84.8
Atru.chr3.581 Acer truncatum HOM05D000049 ORTHO05D000027 5.4e-15 84.3 46 84.8
AL3G51670 Arabidopsis lyrata HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
AT2G18390 Arabidopsis thaliana HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
arahy.Tifrunner.gnm1.ann1.4F14CM Arachis hypogaea HOM05D000049 ORTHO05D000027 5.4e-15 84.3 46 84.8
arahy.Tifrunner.gnm1.ann1.RR0NEL Arachis hypogaea HOM05D000049 ORTHO05D000027 5.4e-15 84.3 46 84.8
BcaC01g06894 Brassica carinata HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
BcaC06g36405 Brassica carinata HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
A06p33240 Brassica napus HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
A07p02350 Brassica napus HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
C03p59210 Brassica napus HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
C07p04470 Brassica napus HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
BolC3t18177H Brassica oleracea HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
BraA06t26255Z Brassica rapa HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
BraA07t28026Z Brassica rapa HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
Carub.0003s3254 Capsella rubella HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
CARHR108990 Cardamine hirsuta HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
ClCG01G019580 Citrullus lanatus HOM05D000049 ORTHO05D000027 5.4e-15 84.3 46 84.8
DCAR_017292 Daucus carota HOM05D000049 ORTHO05D000027 5.4e-15 84.3 46 84.8
Thhalv10022871m.g Eutrema salsugineum HOM05D000049 ORTHO05D000027 5.4e-15 84.3 48 81.2
Gohir.D11G190700 Gossypium hirsutum HOM05D000049 ORTHO05D000027 5.4e-15 84.3 46 82.6
Gorai.007G203200 Gossypium raimondii HOM05D000049 ORTHO05D000027 5.4e-15 84.3 46 82.6
Cpa.g.sc6.116 Carica papaya HOM05D000049 ORTHO05D000027 7.0e-15 84.0 46 82.6
CiPaw.01G039600 Carya illinoinensis HOM05D000049 ORTHO05D000027 7.0e-15 84.0 46 84.8
CsaV3_6G046260 Cucumis sativus L. HOM05D000049 ORTHO05D000027 7.0e-15 84.0 46 82.6
Gohir.D03G014100 Gossypium hirsutum HOM05D000049 ORTHO05D000027 7.0e-15 84.0 46 82.6
Gorai.003G014400 Gossypium raimondii HOM05D000049 ORTHO05D000027 7.0e-15 84.0 46 82.6
Lj1g0019429 Lotus japonicus HOM05D000049 ORTHO05D000027 7.0e-15 84.0 46 84.8
QL06p046218 Quercus lobata HOM05D000049 ORTHO05D000027 7.0e-15 84.0 45 82.2
Aa31LG8G15640 Aethionema arabicum HOM05D000049 ORTHO05D000027 9.1e-15 83.6 48 81.2
LjContig00448g0006848 Lotus japonicus HOM05D000049 ORTHO05D000027 9.1e-15 83.6 46 82.6
Oeu042403.1 Olea europaea HOM05D000049 ORTHO05D000027 9.1e-15 83.6 46 84.8
Potri.007G024800 Populus trichocarpa HOM05D000049 ORTHO05D000027 9.1e-15 83.6 46 84.8
EL10Ac6g15558 Beta vulgaris HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 82.6
BolC7t40842H Brassica oleracea HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 82.6
AUR62004056 Chenopodium quinoa HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 82.6
AUR62007570 Chenopodium quinoa HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 82.6
Ca_22270_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 84.8
Ca_22283_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 84.8
MD03G1270500 Malus domestica HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 82.6
Hund20734 Selenicereus undatus HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 82.6
TPR.G24123 Trifolium pratense HOM05D000049 ORTHO05D000027 1.2e-14 83.2 46 84.8
CDE07G1378 Ceratophyllum demersum HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
ClCG01G019550 Citrullus lanatus HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
Cc03_g11540 Coffea canephora HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
FvH4_5g39540 Fragaria vesca HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
FAN04G0739 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
FAN08G3444 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
FAN18G4380 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
Lj3g0012089 Lotus japonicus HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
Manes.02G099400 Manihot esculenta HOM05D000049 ORTHO05D000027 1.6e-14 82.8 61 70.5
PGR119G0481 Punica granatum HOM05D000049 ORTHO05D000027 1.6e-14 82.8 61 70.5
Sc03g0002990 Simmondsia chinensis HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
TAR625G0429 Trochodendron aralioides HOM05D000049 ORTHO05D000027 1.6e-14 82.8 46 82.6
Haze_25324 Corylus avellana HOM05D000049 ORTHO05D000027 2.0e-14 82.4 47 80.9
MELO3C007829.2 Cucumis melo HOM05D000049 ORTHO05D000027 2.0e-14 82.4 46 82.6
FAN13G2744 Fragaria x ananassa HOM05D000049 ORTHO05D000027 2.0e-14 82.4 46 80.4
RcHm_v2.0_Chr7g0241851 Rosa chinensis HOM05D000049 ORTHO05D000027 2.0e-14 82.4 46 82.6
SGA_v2.0_scaffold614G53204 Striga asiatica HOM05D000049 ORTHO05D000027 2.0e-14 82.4 46 82.6
TAR381G0235 Trochodendron aralioides HOM05D000049 ORTHO05D000027 2.0e-14 82.4 46 82.6
unitig_736.g22543 Utricularia gibba HOM05D000049 ORTHO05D011980 2.0e-14 82.4 46 82.6
EL10Ac7g16258 Beta vulgaris HOM05D000049 ORTHO05D000027 2.7e-14 82.0 46 80.4
Medtr8g077540 Medicago truncatula HOM05D000049 ORTHO05D000027 2.7e-14 82.0 46 82.6
Sp3g31800 Schrenkiella parvula HOM05D000049 ORTHO05D000027 2.7e-14 82.0 48 79.2
SpUn0030_0030 Schrenkiella parvula HOM05D000049 ORTHO05D000027 2.7e-14 82.0 48 79.2
FAN18G1560 Fragaria x ananassa HOM05D000049 ORTHO05D000027 3.5e-14 81.6 59 69.5
BcaB03g16643 Brassica carinata HOM05D000049 ORTHO05D000027 4.5e-14 81.3 48 79.2
Cfa004414 Carpinus fangiana HOM05D000049 ORTHO05D000027 4.5e-14 81.3 46 82.6
Cfa009642 Carpinus fangiana HOM05D000049 ORTHO05D000027 4.5e-14 81.3 46 82.6
HanXRQChr09g0261491 Helianthus annuus HOM05D000049 ORTHO05D000027 4.5e-14 81.3 46 80.4
Lalb_Chr09g0333501 Lupinus albus HOM05D000049 ORTHO05D000027 4.5e-14 81.3 44 84.1
Solyc07g014650.3 Solanum lycopersicum HOM05D000049 ORTHO05D000027 4.5e-14 81.3 46 80.4
Sopen07g005510 Solanum pennellii HOM05D000049 ORTHO05D000027 4.5e-14 81.3 46 80.4
Sopen09g026030 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-14 81.3 46 78.3
PGSC0003DMG401020702 Solanum tuberosum HOM05D000049 ORTHO05D011980 4.5e-14 81.3 46 80.4
GSVIVG01018953001 Vitis vinifera HOM05D000049 ORTHO05D000027 4.5e-14 81.3 46 82.6
Aqoxy5G01620 Aquilegia oxysepala HOM05D000049 ORTHO05D000027 5.9e-14 80.9 46 78.3
SalBow1G0952 Salvia bowleyana HOM05D000049 ORTHO05D000027 5.9e-14 80.9 46 78.3
CAN.G33.7 Capsicum annuum HOM05D000049 ORTHO05D000027 7.7e-14 80.5 46 78.3
Migut.H00987 Erythranthe guttata HOM05D000049 ORTHO05D000027 7.7e-14 80.5 46 80.4
Nitab4.5_0000053g0130 Nicotiana tabacum HOM05D000049 ORTHO05D000027 7.7e-14 80.5 46 80.4
Nitab4.5_0004947g0020 Nicotiana tabacum HOM05D000049 ORTHO05D000027 1.0e-13 80.1 45 80.0
PSO017G0329 Papaver somniferum HOM05D000049 ORTHO05D000027 1.0e-13 80.1 46 78.3
ATR0916G006 Amborella trichopoda HOM05D000049 ORTHO05D000027 1.3e-13 79.7 45 77.8
Nn1g04974 Nelumbo nucifera HOM05D000049 ORTHO05D000027 1.3e-13 79.7 46 80.4
PSO675G6496 Papaver somniferum HOM05D000049 ORTHO05D000027 1.3e-13 79.7 46 76.1
Zm00001eb052220 Zea mays HOM05D000049 ORTHO05D000027 1.3e-13 79.7 46 76.1
CANSAT54G0966 Cannabis sativa HOM05D000049 ORTHO05D000027 2.3e-13 79.0 46 78.3
Peaxi162Scf00889g00110 Petunia axillaris HOM05D000049 ORTHO05D000027 2.3e-13 79.0 46 76.1
Psat4g092960 Pisum sativum HOM05D000049 ORTHO05D000027 2.3e-13 79.0 46 78.3
THA.LOC104819787 Tarenaya hassleriana HOM05D000049 ORTHO05D000027 2.9e-13 78.6 46 78.3
Hma1.2p1_0400F.1_g144370 Hydrangea macrophylla HOM05D000049 ORTHO05D000027 3.8e-13 78.2 47 78.7
Lj4A201T51 Lonicera japonica HOM05D000049 ORTHO05D000027 8.6e-13 77.0 46 80.4
CAN.G700.20 Capsicum annuum HOM05D000049 ORTHO05D000027 1.5e-12 76.3 46 76.1
Os02g0327100 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 1.9e-12 75.9 46 73.9
SEGI_00520 Sequoiadendron giganteum HOM05D000049 ORTHO05D000027 2.5e-12 75.5 46 73.9
COL.COLO4_35758 Corchorus olitorius HOM05D003614 ORTHO05D004156 4.2e-12 74.7 42 78.6
RcHm_v2.0_Chr7g0224231 Rosa chinensis HOM05D000049 ORTHO05D000027 5.5e-12 74.3 54 70.4
HPP92_027717 Vanilla planifolia HOM05D000049 ORTHO05D000027 5.5e-12 74.3 46 71.7
FAN12G1829 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.2e-11 73.2 46 78.3
FAN12G2068 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.2e-11 73.2 46 78.3
Lsat_1_v5_gn_4_152040 Lactuca sativa HOM05D000049 ORTHO05D000027 2.1e-11 72.4 41 78.0
SHI22886 Sapria himalayana HOM05D000049 ORTHO05D000027 2.1e-11 72.4 44 70.5
EL10Ac5g12252 Beta vulgaris HOM05D000049 ORTHO05D000015 2.8e-11 72.0 39 82.1
Mapoly0224s0005 Marchantia polymorpha HOM05D000049 ORTHO05D000027 2.8e-11 72.0 46 71.7
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 6.1e-11 70.9 39 82.1
FAN08G3378 Fragaria x ananassa HOM05D000049 ORTHO05D011980 6.1e-11 70.9 37 83.8
Prupe.5G036300 Prunus persica HOM05D000049 ORTHO05D000027 1.0e-10 70.1 40 82.5
AagrBONN_evm.TU.Sc2ySwM_228.5565 Anthoceros agrestis HOM05D000049 ORTHO05D000027 6.8e-10 67.4 43 69.8
Manes.01G002350 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.01G054104 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.03G072500 Manihot esculenta HOM05D000049 ORTHO05D011980 1.2e-09 66.6 52 65.4
Manes.07G060000 Manihot esculenta HOM05D001159 ORTHO05D014949 1.2e-09 66.6 37 78.4
Manes.07G069732 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.12G112901 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.13G085501 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.13G088960 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.15G176808 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.15G179066 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.17G014801 Manihot esculenta HOM05D000389 ORTHO05D011980 1.2e-09 66.6 37 78.4
Manes.02G161350 Manihot esculenta HOM05D000049 ORTHO05D011980 1.5e-09 66.2 37 78.4
Manes.03G127202 Manihot esculenta HOM05D000049 ORTHO05D011980 1.5e-09 66.2 37 78.4
Manes.15G180834 Manihot esculenta HOM05D000049 ORTHO05D011980 1.5e-09 66.2 37 78.4
Manes.15G179612 Manihot esculenta HOM05D000049 ORTHO05D011980 5.7e-09 64.3 52 63.5
Manes.18G141025 Manihot esculenta HOM05D000389 ORTHO05D011980 5.7e-09 64.3 37 75.7
Manes.05G135126 Manihot esculenta HOM05D000049 ORTHO05D011980 9.8e-09 63.5 37 75.7
SMO147G0423 Selaginella moellendorffii HOM05D000049 ORTHO05D000027 1.7e-08 62.8 46 65.2
Manes.06G000133 Manihot esculenta HOM05D000049 ORTHO05D011980 4.9e-08 61.2 52 61.5
Pp3c8_12060 Physcomitrium patens HOM05D000728 ORTHO05D001474 2.7e-06 55.5 45 53.3


User provided reference genes

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