Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 4.9e-96 354.4 169 100.0
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 2.2e-75 285.8 151 87.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 3.6e-62 241.9 146 80.8
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.0e-60 236.1 134 82.8
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 9.7e-60 233.8 146 78.1
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.3e-59 233.4 148 75.7
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.8e-59 232.3 134 81.3
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.7e-59 231.9 148 75.7
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 4.1e-58 228.4 148 73.6
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 7.0e-58 227.6 140 75.0
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 9.1e-58 227.3 147 74.1
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.2e-57 226.9 149 71.8
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.6e-57 226.5 146 74.7
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.6e-57 226.5 151 75.5
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.6e-57 226.5 153 72.5
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.0e-57 226.1 145 74.5
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 2.6e-57 225.7 143 74.1
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.3e-56 223.4 148 72.3
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.7e-56 223.0 144 74.3
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 2.9e-56 222.2 148 70.9
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 2.9e-56 222.2 147 72.1
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 5.0e-56 221.5 153 71.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 6.5e-56 221.1 148 77.0
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 8.5e-56 220.7 147 70.7
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.1e-55 220.3 144 75.0
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.5e-55 219.2 139 74.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 2.5e-55 219.2 121 83.5
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.5e-55 219.2 142 72.5
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 3.2e-55 218.8 145 74.5
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 4.2e-55 218.4 121 83.5
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 5.5e-55 218.0 122 81.1
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 5.5e-55 218.0 148 71.6
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 7.2e-55 217.6 122 83.6
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 9.4e-55 217.2 147 72.8
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.2e-54 216.9 146 72.6
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 4.7e-54 214.9 149 70.5
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.7e-54 214.9 151 72.8
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 6.1e-54 214.5 144 69.4
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 8.0e-54 214.2 144 69.4
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 8.0e-54 214.2 151 69.5
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.0e-53 213.8 142 72.5
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.4e-53 213.4 144 70.1
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.4e-53 213.4 148 70.9
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 1.8e-53 213.0 150 70.0
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.8e-53 213.0 119 80.7
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.3e-53 212.6 147 71.4
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.3e-53 212.6 148 70.9
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 2.3e-53 212.6 146 69.2
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.0e-53 212.2 140 72.9
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.0e-53 211.8 147 66.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 4.0e-53 211.8 148 67.6
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.2e-53 211.5 151 70.9
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 5.2e-53 211.5 123 78.9
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.0e-52 209.5 129 75.2
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.0e-52 209.5 151 68.9
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.0e-52 209.5 147 70.1
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.0e-52 209.5 148 69.6
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.0e-52 209.5 148 70.9
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 9.7e-52 207.2 153 64.7
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 9.7e-52 207.2 141 70.9
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.7e-51 206.5 140 67.1
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.8e-51 205.7 146 66.4
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 3.7e-51 205.3 141 68.8
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.7e-51 205.3 149 69.8
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 8.3e-51 204.1 143 65.7
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 8.3e-51 204.1 143 68.5
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 8.3e-51 204.1 134 71.6
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.1e-50 203.8 147 66.0
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.4e-50 203.4 147 66.0
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.8e-50 203.0 143 66.4
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.4e-50 202.6 125 72.8
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 2.4e-50 202.6 147 65.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 3.1e-50 202.2 142 66.9
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 4.1e-50 201.8 147 70.1
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.2e-49 200.3 143 64.3
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.6e-49 199.9 142 64.1
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.6e-49 199.9 142 64.1
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 4.5e-49 198.4 144 63.9
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 5.9e-49 198.0 148 64.2
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 5.9e-49 198.0 137 68.6
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 7.7e-49 197.6 147 63.9
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.3e-48 196.8 140 66.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.9e-48 195.7 154 61.7
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 3.8e-48 195.3 136 67.6
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 8.5e-48 194.1 144 65.3
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.1e-47 193.7 141 64.5
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 3.2e-47 192.2 132 72.7
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 4.2e-47 191.8 137 64.2
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 5.5e-47 191.4 125 72.8
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 5.5e-47 191.4 125 72.8
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.6e-46 188.7 129 66.7
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 4.7e-46 188.3 144 65.3
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.7e-46 188.3 144 64.6
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.4e-45 186.8 127 70.9
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.4e-45 186.8 154 59.1
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 5.2e-45 184.9 161 57.1
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 3.4e-44 182.2 125 64.8
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.7e-43 179.9 145 65.5
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.1e-42 177.2 173 51.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 4.1e-42 175.3 111 70.3
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 7.5e-36 154.5 89 78.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 6.6e-32 141.4 147 53.1
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.5e-31 139.4 119 55.5
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 4.3e-31 138.7 82 74.4
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.6e-30 136.7 76 81.6
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 4.7e-30 135.2 148 52.0
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 3.1e-29 132.5 136 50.0
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 5.4e-26 121.7 75 68.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.0e-25 119.8 137 47.4
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 6.0e-25 118.2 116 47.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 7.8e-25 117.9 124 48.4
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 3.0e-24 115.9 123 52.0
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 3.3e-23 112.5 63 79.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.1e-21 107.5 91 54.9
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.4e-21 107.1 91 53.8
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.8e-21 106.7 94 47.9
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 2.0e-20 103.2 91 51.6
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 3.4e-20 102.4 100 49.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 6.0e-17 91.7 100 42.0
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-16 90.5 93 46.2
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.9e-15 86.7 56 66.1
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.2e-14 84.0 63 63.5
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-12 77.0 68 51.5
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 7.5e-12 74.7 63 58.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.9e-10 70.1 41 73.2
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 6.6e-08 61.6 54 57.4
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 8.6e-08 61.2 39 69.2


User provided reference genes

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