Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 9.6e-295 1016.1 537 100.0
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.5e-244 847.8 562 83.6
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 5.0e-243 844.3 535 84.1
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 1.3e-238 829.7 535 83.2
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.4e-237 826.2 536 82.3
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.2e-236 823.2 536 82.5
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.6e-236 822.8 536 82.1
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 2.0e-236 822.4 535 81.1
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 2.7e-236 822.0 535 81.1
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 4.5e-236 821.2 536 82.3
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.0e-235 820.1 541 82.3
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.0e-235 820.1 535 81.9
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.7e-235 819.3 536 81.7
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.7e-235 819.3 532 82.3
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.9e-235 818.5 535 81.5
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 5.0e-235 817.8 532 82.0
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 8.5e-235 817.0 536 81.7
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.5e-234 816.2 535 81.7
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.5e-234 816.2 531 81.2
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.5e-234 815.5 534 80.9
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.5e-234 815.5 528 81.8
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 7.2e-234 813.9 536 80.8
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 7.2e-234 813.9 534 80.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 7.2e-234 813.9 523 83.2
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.7e-233 812.0 536 80.8
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.7e-233 811.2 552 79.3
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 6.1e-233 810.8 536 81.2
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 6.1e-233 810.8 526 81.7
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.0e-232 810.1 536 80.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.4e-232 809.7 536 81.5
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.0e-232 808.5 528 81.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 4.0e-232 808.1 536 80.2
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.2e-232 807.7 536 80.4
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 8.8e-232 807.0 536 80.0
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.2e-231 806.6 528 81.2
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.2e-231 806.6 536 80.2
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.5e-231 806.2 528 80.9
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 1.5e-231 806.2 529 81.1
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.0e-231 805.8 536 80.4
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.4e-231 805.1 535 80.4
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 3.4e-231 805.1 553 78.8
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 4.4e-231 804.7 528 81.1
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.4e-231 804.7 528 80.7
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.7e-231 804.3 529 80.3
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 7.5e-231 803.9 536 80.0
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.3e-230 803.1 529 80.7
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.7e-230 802.7 528 80.7
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.7e-230 802.7 528 80.9
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.7e-230 802.7 528 80.9
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.2e-230 802.4 528 80.1
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.8e-230 802.0 529 79.6
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 6.3e-230 800.8 528 80.7
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.1e-229 800.0 528 80.5
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.1e-229 800.0 528 79.7
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.8e-229 799.3 528 80.1
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.4e-229 798.9 535 80.0
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.1e-229 798.1 528 80.1
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 7.0e-229 797.3 529 79.4
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 9.1e-229 797.0 529 80.0
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.6e-228 796.2 532 78.9
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.7e-228 795.4 528 79.5
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 2.7e-228 795.4 528 79.5
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 3.5e-228 795.0 528 80.5
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 4.5e-228 794.7 528 79.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 4.5e-228 794.7 526 79.1
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 5.9e-228 794.3 534 79.4
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.0e-227 793.5 528 79.2
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.0e-227 793.5 528 80.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 2.9e-227 792.0 528 79.2
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 3.8e-227 791.6 535 78.9
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 6.6e-227 790.8 528 78.4
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.5e-226 789.6 528 79.2
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 3.3e-226 788.5 528 78.8
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 5.5e-226 787.7 528 78.8
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 5.5e-226 787.7 528 79.4
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.2e-225 786.6 531 78.9
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.2e-225 786.6 528 79.4
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.2e-225 786.6 529 79.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.1e-225 785.8 531 79.3
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.6e-225 785.0 528 79.5
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 8.0e-225 783.9 539 78.7
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-223 780.0 528 78.0
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 2.0e-223 779.2 528 78.2
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.0e-223 779.2 516 82.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.6e-223 778.9 500 84.2
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.4e-223 778.5 528 78.0
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 9.8e-223 776.9 528 77.7
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 9.8e-223 776.9 528 77.7
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.7e-222 776.2 528 80.1
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.7e-222 776.2 534 76.8
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.9e-222 775.4 536 76.1
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 3.7e-222 775.0 498 83.9
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.9e-222 774.6 527 79.3
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 4.9e-222 774.6 535 77.2
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 3.2e-221 771.9 529 76.9
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 5.2e-216 754.6 544 75.7
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 6.4e-214 747.7 474 84.4
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.4e-213 746.5 528 75.0
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 5.4e-213 744.6 535 77.2
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.2e-212 743.4 491 81.3
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 5.6e-210 734.6 507 78.1
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.1e-208 728.8 528 72.9
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 8.9e-208 727.2 477 81.6
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.7e-206 723.0 477 82.8
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 4.9e-206 721.5 477 80.5
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.4e-205 719.9 646 62.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.9e-202 709.5 495 75.8
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 2.5e-202 709.1 514 75.1
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 2.3e-195 686.0 535 68.4
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 5.1e-195 684.9 526 68.6
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 3.3e-194 682.2 534 71.0
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 8.9e-192 674.1 443 84.4
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.6e-191 672.5 531 68.7
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 4.6e-188 661.8 531 66.1
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 5.6e-186 654.8 531 65.3
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.7e-182 643.3 435 79.8
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 1.9e-178 629.8 436 77.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 3.6e-177 625.5 478 70.3
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.0e-175 619.8 435 76.8
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 4.2e-173 612.1 479 68.3
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.2e-172 610.5 443 74.7
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.9e-170 603.2 461 70.1
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.5e-170 602.8 468 69.7
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.2e-166 589.7 462 68.4
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 4.6e-164 582.0 466 66.3
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 3.0e-163 579.3 409 77.8
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 9.7e-154 547.7 510 63.7
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 2.2e-153 546.6 528 59.8
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.7e-148 529.6 314 85.4
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 5.5e-141 505.4 531 57.3
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.4e-131 474.2 338 76.6
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 5.3e-128 462.2 340 74.4
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 4.2e-125 452.6 397 61.0
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 1.8e-123 447.2 269 84.8
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.5e-122 444.1 398 64.3
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 5.4e-120 435.6 257 86.8
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 7.7e-119 431.8 285 80.0
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 2.1e-116 423.7 535 46.2
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 3.4e-114 416.4 296 77.7
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.1e-87 327.4 523 44.7
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 6.2e-76 289.3 186 77.4
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 7.8e-71 272.3 254 58.7
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 6.6e-70 269.2 525 38.5
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 1.1e-61 241.9 280 52.1
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 4.3e-61 240.0 163 78.5
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 3.3e-53 213.8 142 78.2
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 6.9e-51 206.1 154 68.2
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 8.4e-49 199.1 126 80.2
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 7.9e-47 192.6 117 86.3
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 3.0e-46 190.7 234 48.7
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.3e-35 153.3 103 76.7
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 8.5e-33 146.0 121 72.7
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 8.5e-33 146.0 102 74.5
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.6e-31 140.6 91 69.2
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 2.2e-28 131.3 103 74.8
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 3.1e-27 127.5 94 71.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 2.6e-26 124.4 78 84.6
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.3e-25 122.1 69 91.3
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 8.5e-25 119.4 79 79.7
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 1.2e-23 115.5 90 60.0
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.1e-21 109.0 68 80.9
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 9.1e-19 99.4 84 63.1
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 4.2e-16 90.5 53 88.7
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 8.2e-12 76.3 58 70.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.1e-11 75.9 141 36.2
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.0e-10 71.6 43 81.4
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 4.2e-08 63.9 39 84.6
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 2.1e-07 61.6 50 64.0
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 3.6e-07 60.8 50 62.0


User provided reference genes

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