Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19459 Vaccinium macrocarpon HOM05D003561 ORTHO05D033939 2.8e-45 184.9 91 100.0
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 8.8e-15 83.6 44 93.2
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 8.8e-15 83.6 44 93.2
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.5e-14 82.0 44 90.9
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.3e-14 81.3 44 90.9
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 5.7e-14 80.9 44 88.6
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 5.7e-14 80.9 44 88.6
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 7.4e-14 80.5 44 86.4
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 9.7e-14 80.1 55 74.5
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.3e-13 79.7 44 86.4
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 2.2e-13 79.0 44 90.9
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 2.2e-13 79.0 44 86.4
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.2e-13 79.0 44 86.4
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.2e-13 79.0 44 86.4
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.2e-13 79.0 44 86.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 2.2e-13 79.0 44 86.4
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.2e-13 79.0 42 88.1
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.8e-13 78.6 44 84.1
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 4.8e-13 77.8 44 84.1
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 8.2e-13 77.0 44 86.4
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.4e-12 76.3 58 70.7
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.4e-12 75.5 44 84.1
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 4.1e-12 74.7 44 84.1
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.2e-11 73.2 44 81.8
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.5e-11 72.8 44 79.5
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 2.6e-11 72.0 44 75.0
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 4.5e-11 71.2 44 75.0
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 4.5e-11 71.2 44 75.0
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.5e-11 71.2 44 77.3
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 5.9e-11 70.9 44 79.5
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 5.9e-11 70.9 44 79.5
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 5.9e-11 70.9 44 79.5
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 5.9e-11 70.9 55 67.3
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 7.7e-11 70.5 44 79.5
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 7.7e-11 70.5 44 75.0
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 7.7e-11 70.5 44 75.0
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 7.7e-11 70.5 44 79.5
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 1.0e-10 70.1 44 72.7
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.0e-10 70.1 44 81.8
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.0e-10 70.1 44 77.3
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.3e-10 69.7 44 75.0
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 1.3e-10 69.7 46 71.7
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.3e-10 69.7 44 72.7
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 1.7e-10 69.3 45 80.0
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 1.7e-10 69.3 42 73.8
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 1.7e-10 69.3 44 72.7
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 1.7e-10 69.3 44 72.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 2.2e-10 68.9 44 72.7
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 2.2e-10 68.9 44 75.0
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 2.9e-10 68.6 44 79.5
Haze_10211 Corylus avellana HOM05D003561 ORTHO05D033939 2.9e-10 68.6 52 69.2
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 2.9e-10 68.6 44 75.0
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 3.8e-10 68.2 42 76.2
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 5.0e-10 67.8 46 69.6
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 5.0e-10 67.8 44 70.5
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 5.0e-10 67.8 45 77.8
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 6.5e-10 67.4 42 71.4
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 8.5e-10 67.0 40 85.0
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 8.5e-10 67.0 44 68.2
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 8.5e-10 67.0 42 69.0
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 1.1e-09 66.6 44 72.7
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 1.4e-09 66.2 45 77.8
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 1.4e-09 66.2 43 79.1
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.4e-09 66.2 48 66.7
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 1.9e-09 65.9 44 65.9
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.5e-09 65.5 48 64.6
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 2.5e-09 65.5 44 68.2
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 3.2e-09 65.1 45 75.6
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.2e-09 65.1 44 77.3
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 3.2e-09 65.1 45 73.3
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 4.2e-09 64.7 45 73.3
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 4.2e-09 64.7 43 74.4
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 4.2e-09 64.7 43 74.4
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 5.5e-09 64.3 53 58.5
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 5.5e-09 64.3 54 59.3
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 5.5e-09 64.3 50 56.0
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 7.2e-09 63.9 55 60.0
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 7.2e-09 63.9 44 63.6
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 7.2e-09 63.9 48 64.6
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.4e-09 63.5 48 62.5
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.4e-09 63.5 48 62.5
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 9.4e-09 63.5 55 58.2
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 9.4e-09 63.5 55 58.2
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 1.2e-08 63.2 34 88.2
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.2e-08 63.2 34 88.2
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.2e-08 63.2 34 88.2
CSS0044993 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D033939 1.2e-08 63.2 44 68.2
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 1.2e-08 63.2 48 66.7
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.2e-08 63.2 44 65.9
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.2e-08 63.2 44 65.9
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.1e-08 62.4 44 65.9
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.1e-08 62.4 44 65.9
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 2.1e-08 62.4 48 62.5
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 4.7e-08 61.2 44 63.6
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 4.7e-08 61.2 67 49.3
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 4.7e-08 61.2 42 64.3
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.0e-07 60.1 75 46.7
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 1.0e-07 60.1 53 58.5
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.8e-07 59.3 53 58.5
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 2.3e-07 58.9 50 64.0
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 3.0e-07 58.5 37 75.7
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 5.1e-07 57.8 51 60.8
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.1e-07 57.8 51 60.8
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 5.1e-07 57.8 42 57.1
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 8.8e-07 57.0 44 59.1
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 8.8e-07 57.0 49 65.3
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.1e-06 56.6 55 56.4
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.5e-06 56.2 51 60.8
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 1.5e-06 56.2 38 71.1
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 2.0e-06 55.8 56 57.1
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 2.0e-06 55.8 56 57.1
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.0e-06 55.8 55 50.9
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.6e-06 55.5 44 56.8
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 2.6e-06 55.5 55 52.7
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 3.3e-06 55.1 55 58.2
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 4.4e-06 54.7 44 59.1
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 5.7e-06 54.3 69 44.9
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 5.7e-06 54.3 44 56.8
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 5.7e-06 54.3 55 52.7
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 5.7e-06 54.3 55 52.7
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 7.4e-06 53.9 43 65.1
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 7.4e-06 53.9 38 65.8
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 7.4e-06 53.9 37 73.0
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 9.7e-06 53.5 76 42.1
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 9.7e-06 53.5 55 47.3
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 9.7e-06 53.5 55 47.3
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 9.7e-06 53.5 55 47.3
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 9.7e-06 53.5 55 47.3


User provided reference genes

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