Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.2e-151 537.3 295 100.0
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 8.0e-126 454.1 295 87.8
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.8e-113 411.0 342 73.7
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 7.3e-111 404.4 305 78.4
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.7e-110 401.7 302 76.5
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.0e-106 387.9 303 76.9
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.3e-104 382.9 299 77.9
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.4e-101 373.6 303 75.6
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 4.4e-100 368.6 299 72.2
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.5e-100 367.9 292 71.9
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.7e-96 356.7 303 71.3
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 5.1e-96 355.1 303 69.6
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 1.5e-95 353.6 301 70.1
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 2.1e-94 349.7 295 68.5
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.8e-94 349.4 298 70.8
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 4.7e-94 348.6 299 69.6
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 8.1e-94 347.8 297 68.7
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.4e-93 347.1 305 68.5
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 2.3e-93 346.3 301 70.1
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.3e-93 346.3 306 69.3
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 2.3e-93 346.3 300 70.7
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.3e-93 346.3 300 69.3
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 4.0e-93 345.5 298 71.1
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 4.0e-93 345.5 299 68.9
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 4.0e-93 345.5 287 71.4
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 6.8e-93 344.7 296 68.9
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 8.9e-93 344.4 300 71.3
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 4.4e-92 342.0 297 69.4
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 4.4e-92 342.0 299 70.2
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 4.4e-92 342.0 302 68.9
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 7.5e-92 341.3 296 70.3
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 7.5e-92 341.3 300 69.3
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 9.9e-92 340.9 297 69.7
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 9.9e-92 340.9 302 67.5
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 9.9e-92 340.9 297 66.7
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.3e-91 340.5 299 67.2
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 8.3e-91 337.8 307 68.7
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.1e-90 337.4 295 69.2
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 1.4e-90 337.0 296 69.6
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.9e-90 336.7 296 68.2
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.9e-90 336.7 292 68.5
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.4e-90 336.3 296 67.9
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 2.4e-90 336.3 209 84.2
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.2e-90 335.9 297 67.7
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 3.2e-90 335.9 298 67.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 3.2e-90 335.9 299 67.2
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 4.1e-90 335.5 301 67.4
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 4.1e-90 335.5 298 67.8
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 9.2e-90 334.3 301 66.4
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.2e-89 334.0 306 67.3
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.6e-89 333.6 296 67.2
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 2.7e-89 332.8 295 67.8
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.7e-89 332.8 302 67.5
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.7e-89 332.8 295 68.5
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.7e-89 332.8 295 65.8
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 4.6e-89 332.0 296 68.9
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.6e-89 332.0 304 66.8
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 6.0e-89 331.6 302 67.2
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 6.0e-89 331.6 299 66.9
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 6.0e-89 331.6 302 67.2
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 7.8e-89 331.3 299 67.6
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.0e-88 330.9 302 67.2
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.3e-88 330.5 305 65.2
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 1.7e-88 330.1 298 66.4
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 3.0e-88 329.3 299 66.9
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 3.9e-88 328.9 300 65.7
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.1e-87 327.4 300 66.3
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 1.5e-87 327.0 298 66.8
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.5e-87 326.2 299 66.9
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 3.3e-87 325.9 299 66.2
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 7.3e-87 324.7 305 66.6
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 2.1e-86 323.2 251 74.5
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.1e-86 323.2 249 73.5
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 2.1e-86 323.2 296 65.9
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 3.6e-86 322.4 305 64.9
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 3.6e-86 322.4 296 65.5
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 4.7e-86 322.0 297 68.0
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 4.7e-86 322.0 296 65.2
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 8.1e-86 321.2 297 66.3
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 1.8e-85 320.1 300 65.7
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 5.2e-85 318.5 296 64.2
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 5.2e-85 318.5 296 66.9
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 5.2e-85 318.5 291 66.7
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.8e-85 318.2 300 66.0
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 1.2e-84 317.4 296 66.2
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.2e-84 317.4 303 65.3
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.6e-84 316.2 295 64.1
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.6e-84 316.2 297 61.6
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 9.9e-84 314.3 195 84.1
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 9.9e-84 314.3 232 75.0
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.3e-83 313.9 312 65.1
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.7e-83 313.5 302 63.2
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 2.2e-83 313.2 295 62.0
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.2e-83 313.2 311 64.3
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.9e-83 312.8 195 82.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 2.9e-83 312.8 296 64.5
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 3.8e-83 312.4 253 72.3
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.4e-82 310.5 306 61.8
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.9e-82 310.1 365 54.8
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 3.2e-82 309.3 294 65.3
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 4.2e-82 308.9 300 64.0
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 9.2e-82 307.8 298 62.1
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.6e-81 307.0 305 61.0
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.6e-81 307.0 331 60.4
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 2.1e-81 306.6 303 62.4
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 2.1e-81 306.6 360 55.6
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 3.5e-81 305.8 303 62.4
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.5e-81 305.8 301 63.5
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 3.5e-81 305.8 278 66.9
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 4.6e-81 305.4 303 62.7
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 4.6e-81 305.4 301 62.8
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 4.6e-81 305.4 303 63.0
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 7.8e-81 304.7 304 62.8
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 7.8e-81 304.7 274 66.1
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.7e-80 303.5 306 63.4
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.3e-80 303.1 305 64.6
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 3.0e-80 302.8 300 62.3
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 3.0e-80 302.8 300 62.3
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 3.9e-80 302.4 302 62.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 5.1e-80 302.0 305 62.0
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 8.7e-80 301.2 305 63.3
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.8e-78 296.2 288 61.5
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 3.6e-78 295.8 266 68.4
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 6.2e-78 295.0 300 63.3
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 7.6e-76 288.1 285 64.2
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.7e-75 287.0 193 79.8
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.2e-74 282.7 296 57.8
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.7e-73 279.6 293 57.0
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.3e-72 276.6 285 57.5
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.3e-71 272.7 199 72.4
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 3.3e-71 272.7 220 67.7
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.6e-70 270.4 182 75.3
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.8e-70 269.6 258 62.4
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.8e-69 266.9 287 60.3
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 5.8e-68 261.9 249 61.4
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.3e-67 260.8 364 50.8
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 3.8e-67 259.2 216 65.3
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.4e-66 257.3 207 67.6
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.9e-66 256.9 297 56.6
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 5.4e-66 255.4 306 51.0
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 7.9e-65 251.5 258 56.6
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.0e-64 251.1 267 55.4
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.5e-63 247.3 267 61.0
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 5.3e-61 238.8 318 49.4
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 8.2e-54 214.9 211 58.3
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.2e-52 211.1 181 60.2
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.9e-51 206.5 211 59.2
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.5e-49 199.5 194 61.9
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.1e-47 194.5 193 59.1
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.1e-39 167.9 107 85.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 9.4e-34 148.3 302 38.7
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 3.0e-32 143.3 89 77.5
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.2e-30 137.1 114 64.0
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 3.7e-30 136.3 265 38.5
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.1e-29 134.8 276 38.4
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.0e-24 118.2 206 39.3
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.1e-23 114.8 161 50.3
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 3.7e-22 109.8 78 79.5
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 3.1e-21 106.7 63 84.1
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 9.1e-21 105.1 63 82.5
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.7e-19 100.9 87 58.6
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 1.3e-11 74.7 262 30.9
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.1e-10 71.6 60 63.3


User provided reference genes

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