Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 2393.6 1336 100.0
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1889.4 1343 79.7
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1882.5 1341 76.6
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1881.3 1343 79.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1739.9 1343 71.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1695.2 1377 69.2
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1639.4 1346 67.3
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1615.5 1269 69.7
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1614.0 1236 70.0
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1613.2 1381 64.4
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1610.9 1405 65.4
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1609.7 1235 68.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1584.7 1353 65.2
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1581.6 1234 69.0
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1580.1 1345 64.6
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1564.7 1373 64.1
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1563.5 1346 64.6
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1561.6 1343 64.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1558.1 1232 68.3
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1556.2 1237 69.9
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1555.4 1234 67.1
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1555.0 1196 68.9
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1551.6 1234 66.9
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1550.8 1232 68.1
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1550.0 1343 63.6
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1545.0 1242 68.3
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1544.6 1349 63.2
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1541.6 1230 67.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1540.8 1232 67.3
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1535.0 1240 67.4
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1534.6 1233 67.2
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1531.2 1347 63.2
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1529.6 1208 67.1
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1528.5 1413 61.6
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1526.5 1227 66.6
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1523.8 1352 63.2
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1522.7 1350 62.2
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1521.5 1243 64.8
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1514.2 1238 66.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1510.4 1231 66.5
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1509.6 1232 65.6
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1506.1 1285 65.4
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1239 65.1
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1205 67.2
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1505.3 1232 65.3
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1505.3 1227 66.8
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1504.2 1234 66.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1501.1 1243 65.9
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1500.7 1236 66.0
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1499.6 1238 65.3
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1497.6 1345 62.4
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1496.9 1228 66.9
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1493.4 1237 64.8
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1492.6 1359 61.7
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1487.6 1346 62.7
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1482.6 1250 65.7
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1481.5 1231 66.2
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1480.7 1235 65.5
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1480.3 1235 65.5
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1479.9 1232 64.4
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1476.8 1196 66.1
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1474.5 1236 64.4
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1472.2 1235 64.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1464.9 1196 65.9
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1463.4 1252 64.1
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1460.3 1256 63.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1458.7 1224 64.4
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1448.7 1232 63.3
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1443.3 1237 64.5
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1441.8 1232 63.4
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1441.8 1233 62.9
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1440.6 1244 64.3
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1229 63.4
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1433.3 1291 61.2
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1413.7 1229 63.2
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1412.1 1261 61.3
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1411.4 1231 63.6
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1407.5 1207 63.6
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1386.7 963 79.2
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1385.9 1359 58.4
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1381.7 1254 61.6
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1379.4 1208 62.6
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1378.6 1249 61.3
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1369.0 1245 60.9
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1367.8 1211 62.3
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1362.4 1370 57.3
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1362.4 1207 62.4
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1362.4 1207 62.4
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1354.7 1228 61.3
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1353.2 1094 65.8
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1352.0 1212 61.8
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1320.1 1259 58.5
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1312.7 1238 59.5
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1281.2 1218 58.0
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1275.4 1190 59.6
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1271.5 1237 57.6
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1239.2 1213 57.0
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1237.6 1270 55.6
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1232.2 1231 55.2
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1227.6 1231 58.0
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1164.4 1247 51.7
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1136.3 1068 60.1
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1134.0 1297 50.3
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1125.5 1234 51.7
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 0.0e+00 1111.7 799 74.7
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1086.6 1258 50.3
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 5.3e-294 1015.0 1256 47.3
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.4e-289 1000.3 1239 47.7
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 4.0e-249 865.9 810 66.5
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 3.0e-244 849.7 1348 43.3
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.5e-243 847.4 742 63.9
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.5e-224 784.3 1127 42.7
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 6.3e-194 682.6 553 70.3
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.9e-191 673.7 429 79.3
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.6e-181 641.3 556 66.9
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 3.1e-177 627.1 472 71.4
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 4.1e-161 573.5 699 53.5
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.2e-150 537.0 1232 34.2
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.1e-149 533.1 1208 33.4
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 8.9e-148 529.3 1234 32.1
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.0e-147 528.1 1240 33.1
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 9.2e-137 492.7 611 48.4
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 7.3e-134 483.0 1172 32.6
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 3.1e-132 477.6 1219 32.2
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 2.8e-109 401.4 1067 32.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 7.6e-99 366.7 1062 31.4
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.9e-94 352.1 1308 27.1
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 2.4e-89 335.1 363 54.0
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.3e-78 298.1 247 63.6
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 2.5e-73 282.0 481 38.3
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.6e-72 279.3 481 38.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.3e-46 191.8 216 51.4
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.3e-34 153.3 97 76.3
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.3e-34 152.5 1227 22.8
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 7.5e-30 137.5 139 58.3
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 3.7e-29 135.2 1248 23.2
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 2.4e-28 132.5 141 50.4
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.2e-27 130.2 99 65.7
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.9e-25 122.9 129 54.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 6.8e-23 114.4 187 39.0
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.5e-22 110.9 127 50.4
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 7.8e-19 100.9 191 36.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.3e-18 99.4 99 58.6
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 1.9e-17 96.3 112 52.7
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.2e-15 88.2 63 66.7
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 6.8e-15 87.8 75 61.3
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.5e-14 86.7 70 58.6
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.3e-13 83.6 70 55.7
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 7.0e-12 77.8 60 65.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 7.0e-12 77.8 60 65.0
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.5e-09 70.1 76 47.4
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 4.7e-08 65.1 46 65.2
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.8e-07 63.2 89 42.7
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 3.4e-06 58.9 84 38.1
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 4.4e-06 58.5 41 70.7
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 5.8e-06 58.2 66 50.0
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 7.5e-06 57.8 49 57.1


User provided reference genes

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