Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 7.8e-267 923.3 495 100.0
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 4.1e-199 698.4 551 74.4
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.4e-170 603.6 531 67.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 5.8e-161 571.6 515 62.1
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.1e-156 557.4 520 61.3
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 7.3e-140 501.5 510 56.5
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.0e-137 493.4 510 54.7
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.6e-137 493.0 513 55.0
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 8.4e-136 488.0 515 55.1
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.4e-135 487.3 512 55.9
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.9e-133 479.2 535 52.9
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 3.6e-131 472.6 513 55.4
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-130 471.1 509 53.4
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.4e-130 470.7 516 53.1
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.8e-130 470.3 536 53.0
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.1e-130 469.5 532 52.8
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 9.9e-129 464.5 510 53.9
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.7e-128 463.8 511 54.0
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.4e-127 460.7 508 53.9
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 5.4e-127 458.8 463 57.0
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 5.4e-127 458.8 514 53.9
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.2e-126 457.6 500 53.4
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.7e-126 456.4 515 53.6
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 6.0e-126 455.3 508 53.0
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 3.0e-125 453.0 489 55.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.9e-125 452.6 508 53.7
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 5.1e-125 452.2 512 52.9
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 8.7e-125 451.4 512 51.2
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.3e-124 449.5 509 53.6
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.6e-124 448.7 412 66.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.1e-123 446.8 509 53.0
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 4.8e-123 445.7 471 60.7
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.4e-122 443.4 497 52.7
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 4.0e-122 442.6 515 52.6
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 5.3e-122 442.2 514 54.1
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 6.9e-122 441.8 507 52.7
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.8e-121 438.7 508 53.1
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 7.6e-121 438.3 441 58.5
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 9.9e-121 438.0 509 52.8
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.9e-121 438.0 510 53.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 2.9e-120 436.4 505 53.9
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.1e-119 434.5 598 47.5
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-119 434.1 509 52.3
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 4.2e-119 432.6 510 51.6
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.5e-119 432.2 509 52.3
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.5e-119 432.2 508 50.8
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 7.1e-119 431.8 507 50.9
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 7.1e-119 431.8 512 51.4
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 9.3e-119 431.4 512 51.4
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.6e-118 430.6 495 51.5
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 2.7e-118 429.9 508 50.4
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.5e-118 429.5 508 50.6
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 4.6e-118 429.1 512 52.1
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.1e-116 424.5 506 52.0
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 4.3e-116 422.5 513 51.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.8e-115 419.9 479 53.9
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.8e-115 419.1 464 51.9
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 8.2e-115 418.3 514 52.7
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.4e-114 417.5 510 51.8
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.5e-113 414.1 509 51.1
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 4.5e-113 412.5 508 50.8
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 4.5e-113 412.5 506 49.8
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.2e-112 410.2 461 52.3
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 2.5e-111 406.8 508 51.0
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.7e-110 403.3 549 48.6
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 6.0e-110 402.1 520 49.2
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 7.9e-110 401.7 510 50.0
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.5e-108 396.7 468 53.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.3e-108 396.4 465 53.1
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 3.3e-108 396.4 498 49.2
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 7.4e-108 395.2 508 48.8
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-106 391.0 510 49.2
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 6.9e-106 388.7 507 49.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.0e-105 387.1 516 49.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 4.5e-105 386.0 515 47.6
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 4.5e-105 386.0 526 46.0
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 7.6e-105 385.2 512 48.2
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.8e-104 382.9 480 50.0
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 5.0e-104 382.5 514 49.4
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 5.0e-104 382.5 489 48.9
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 9.3e-103 378.3 483 48.7
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.8e-101 374.0 499 46.9
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 3.0e-101 373.2 540 46.7
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.1e-100 371.3 475 47.8
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 3.4e-97 359.8 410 54.1
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.4e-97 359.8 470 46.6
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.3e-96 357.8 498 45.2
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 3.8e-96 356.3 499 46.3
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 7.2e-95 352.1 471 45.9
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 6.1e-94 349.0 516 43.4
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.0e-93 348.2 525 43.4
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.4e-92 342.8 518 43.2
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 4.4e-92 342.8 500 44.8
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 9.7e-92 341.7 526 42.8
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 4.8e-91 339.3 508 44.7
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 8.2e-91 338.6 531 43.7
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 1.1e-90 338.2 522 44.3
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 5.3e-90 335.9 538 42.2
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 9.1e-90 335.1 489 44.4
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 5.9e-89 332.4 515 44.5
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.7e-88 330.9 506 43.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.1e-87 328.2 517 43.7
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 5.5e-87 325.9 503 42.9
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.7e-86 323.6 516 42.1
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 2.7e-86 323.6 489 43.8
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.7e-86 322.8 502 43.2
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 6.1e-86 322.4 480 44.8
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.3e-85 320.5 486 44.2
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.0e-85 320.1 521 43.2
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 3.9e-85 319.7 512 42.6
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 3.3e-84 316.6 508 42.7
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 7.4e-84 315.5 480 44.4
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 3.7e-83 313.2 508 42.3
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 3.7e-83 313.2 525 42.3
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 4.8e-83 312.8 523 42.1
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 8.2e-83 312.0 512 42.4
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.4e-82 311.2 525 42.1
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.8e-82 310.8 484 43.4
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 3.1e-82 310.1 484 43.6
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 5.3e-82 309.3 514 42.2
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 3.8e-80 303.1 491 43.6
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 8.5e-80 302.0 477 43.8
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.9e-79 300.8 509 39.7
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.5e-76 291.2 436 45.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.0e-76 290.8 483 43.7
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 4.4e-76 289.7 269 61.7
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.7e-75 287.7 510 40.0
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 8.2e-75 285.4 363 48.8
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 6.5e-72 275.8 521 39.5
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.5e-71 274.6 365 47.7
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 9.4e-71 271.9 353 47.9
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 4.4e-68 263.1 489 39.5
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 4.1e-66 256.5 220 62.7
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 7.2e-63 245.7 302 52.0
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 3.6e-62 243.4 511 37.4
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.4e-61 241.5 251 58.6
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.0e-61 240.4 388 42.5
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.0e-60 237.7 451 39.2
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.7e-59 234.6 541 35.1
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 3.0e-53 213.8 185 63.2
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 8.3e-51 205.7 380 38.4
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 8.6e-48 195.7 398 35.9
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.5e-44 184.9 393 35.9
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.4e-44 183.3 368 37.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.4e-42 177.6 393 35.6
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.7e-41 174.1 393 35.4
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 6.6e-40 169.5 228 45.6
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 8.1e-38 162.5 456 31.6
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.0e-37 160.2 228 46.1
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.5e-36 158.3 470 33.2
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 7.5e-36 156.0 441 31.5
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 2.7e-33 147.5 284 40.1
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 8.1e-30 136.0 144 52.8
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.7e-27 128.3 533 28.7
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 9.2e-26 122.5 475 26.3
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.9e-24 117.1 141 49.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.8e-22 110.9 165 44.8
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 4.7e-22 110.2 438 28.3
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.8e-21 108.2 131 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 9.0e-21 105.9 132 47.7
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 9.0e-21 105.9 131 45.8
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 6.4e-19 99.8 63 73.0
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 3.1e-13 80.9 239 31.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.0e-13 80.5 243 30.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.2e-12 79.0 56 69.6
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.7e-11 75.1 83 54.2
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.1e-10 72.4 205 33.2
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.4e-10 71.2 62 53.2
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 5.4e-10 70.1 52 67.3
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 6.0e-09 66.6 53 56.6
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 6.0e-09 66.6 96 43.8
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 5.6e-07 60.1 81 50.6
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.6e-07 60.1 106 35.8
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.3e-06 58.9 55 60.0
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 4.8e-06 57.0 44 61.4


User provided reference genes

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