Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 5.4e-201 704.1 358 100.0
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 1.4e-119 433.7 374 66.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 8.0e-112 407.9 303 71.6
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.2e-101 373.2 319 63.6
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 2.3e-98 363.2 319 60.8
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 3.8e-98 362.5 318 61.9
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 3.8e-98 362.5 322 61.5
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.6e-96 357.1 313 62.0
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.5e-94 350.5 307 61.2
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.0e-94 350.1 316 61.4
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 2.0e-94 350.1 275 64.4
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.4e-92 344.0 277 64.3
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.2e-91 340.9 310 60.0
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.3e-90 337.4 319 57.7
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 6.6e-90 335.1 289 61.6
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 8.6e-90 334.7 316 57.0
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 1.9e-89 333.6 268 64.2
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 4.3e-89 332.4 314 57.6
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 7.3e-89 331.6 276 62.3
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.3e-89 331.6 266 62.4
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 2.8e-88 329.7 278 62.6
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 6.1e-88 328.6 275 61.8
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.8e-87 327.0 316 58.5
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.3e-87 326.6 318 56.3
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 4.0e-87 325.9 304 59.5
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 8.9e-87 324.7 296 59.8
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 1.5e-86 323.9 283 60.4
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.5e-86 323.9 268 62.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 2.0e-86 323.6 286 61.2
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 2.6e-86 323.2 318 57.2
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 4.4e-86 322.4 273 61.2
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.8e-86 322.0 286 61.2
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 9.8e-86 321.2 268 61.9
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 9.8e-86 321.2 309 56.3
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 2.9e-85 319.7 276 60.5
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 3.7e-85 319.3 294 58.8
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 3.7e-85 319.3 264 63.3
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 3.7e-85 319.3 314 57.0
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 6.4e-85 318.5 274 61.3
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.4e-84 317.4 271 60.5
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 1.8e-84 317.0 309 54.7
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.8e-84 317.0 318 55.3
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 2.4e-84 316.6 278 60.8
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 3.2e-84 316.2 318 54.1
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 3.2e-84 316.2 264 61.0
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 3.2e-84 316.2 318 55.0
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 4.1e-84 315.8 322 54.3
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.1e-84 315.8 286 59.8
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 4.1e-84 315.8 280 59.6
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.6e-83 313.9 269 61.0
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 3.5e-83 312.8 322 53.7
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 4.6e-83 312.4 262 61.5
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 6.0e-83 312.0 328 54.0
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 7.8e-83 311.6 283 58.3
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.7e-82 310.5 270 59.3
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.7e-82 310.5 321 55.8
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 2.3e-82 310.1 312 53.8
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.3e-82 310.1 264 61.4
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 2.3e-82 310.1 262 59.5
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 3.9e-82 309.3 288 58.0
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 5.0e-82 308.9 327 52.3
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 6.6e-82 308.5 315 53.3
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 6.6e-82 308.5 320 53.1
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 8.6e-82 308.1 283 57.6
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.1e-81 307.8 282 57.8
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.5e-81 307.4 201 75.6
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 3.3e-81 306.2 308 54.9
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 7.3e-81 305.1 315 54.6
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 7.3e-81 305.1 285 57.2
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 9.5e-81 304.7 271 59.8
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 9.5e-81 304.7 309 53.1
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.2e-80 304.3 288 55.2
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.6e-80 303.9 269 58.7
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.6e-80 303.9 288 54.2
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.6e-80 303.9 316 50.9
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.6e-80 303.9 288 54.2
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.6e-80 303.9 315 53.7
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.1e-80 303.5 285 55.1
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 2.1e-80 303.5 295 54.9
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 2.8e-80 303.1 287 54.0
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 4.7e-80 302.4 286 55.2
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 4.7e-80 302.4 308 51.6
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 2.3e-79 300.1 272 56.2
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.3e-79 300.1 259 60.6
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.2e-79 298.9 278 57.2
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 5.2e-79 298.9 224 67.0
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.8e-79 298.5 278 56.8
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.9e-79 298.1 278 56.8
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.2e-78 297.7 275 56.7
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 5.8e-78 295.4 307 53.7
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.9e-77 292.4 294 54.8
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 4.9e-77 292.4 263 58.9
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 6.4e-77 292.0 327 51.7
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 6.4e-77 292.0 266 58.3
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.2e-75 287.7 265 56.6
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 3.5e-75 286.2 309 50.5
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.7e-74 283.9 198 67.7
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 2.3e-74 283.5 280 53.2
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.3e-74 283.5 314 49.7
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.1e-73 281.2 323 48.6
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.9e-73 280.4 313 51.1
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 1.9e-73 280.4 267 53.2
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 3.3e-73 279.6 307 49.5
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 9.5e-73 278.1 256 56.6
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.6e-72 277.3 269 54.3
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.8e-72 276.6 260 58.5
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 3.6e-72 276.2 289 55.4
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 8.1e-72 275.0 189 69.8
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.4e-71 274.2 299 51.2
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.1e-71 273.1 313 47.6
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.1e-71 273.1 268 54.1
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 2.0e-70 270.4 296 51.7
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 1.3e-69 267.7 261 55.6
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.1e-68 264.6 167 77.2
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 2.1e-64 250.4 316 45.9
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.1e-64 250.4 306 45.1
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 8.9e-63 245.0 147 81.0
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.2e-62 244.6 315 44.8
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.7e-61 240.7 318 46.5
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.9e-61 240.0 146 78.8
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 4.9e-61 239.2 268 51.1
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.1e-60 238.0 243 54.7
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 4.2e-60 236.1 268 48.5
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.6e-59 234.2 309 46.0
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.7e-59 233.4 152 75.0
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 3.5e-59 233.0 171 67.8
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.9e-57 227.3 143 77.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 5.6e-57 225.7 199 57.3
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.3e-57 225.3 353 39.4
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 3.6e-56 223.0 261 47.5
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 2.4e-55 220.3 153 68.6
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 3.1e-55 219.9 153 67.3
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.5e-51 206.5 299 43.8
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.2e-44 183.3 158 55.7
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.3e-41 173.3 239 44.4
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.6e-38 163.7 97 79.4
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 3.8e-37 159.8 323 33.1
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 4.2e-36 156.4 205 42.9
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 5.5e-36 156.0 199 42.7
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.8e-34 151.0 120 60.8
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 8.7e-34 148.7 181 44.2
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 9.3e-28 128.6 185 42.2
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 8.7e-26 122.1 94 63.8
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.3e-23 112.8 172 39.5
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 3.4e-22 110.2 189 38.1
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.7e-21 107.8 141 46.1
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 3.6e-19 100.1 190 35.8
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 3.9e-18 96.7 142 40.8
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 3.1e-15 87.0 115 41.7
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.9e-11 72.4 126 37.3
CSS0004988 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-08 63.2 102 41.2
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.8e-07 61.2 166 33.1
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 9.1e-07 58.9 83 41.0


User provided reference genes

Program Settings