Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 0.0e+00 1376.7 695 100.0
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 0.0e+00 1112.8 677 86.0
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 4.6e-273 944.5 684 74.7
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 9.0e-253 877.1 579 77.4
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 2.1e-249 865.9 700 65.6
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.7e-249 865.5 587 76.0
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.7e-249 865.5 659 69.0
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 3.5e-249 865.1 685 65.8
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.8e-248 862.8 675 67.9
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 5.1e-248 861.3 665 68.1
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 8.7e-248 860.5 660 68.2
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 1.5e-247 859.8 686 66.8
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.3e-246 856.7 686 67.2
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.6e-246 856.3 691 66.1
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.4e-245 852.4 688 66.3
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 2.6e-244 849.0 687 65.9
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 5.0e-243 844.7 619 69.3
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 4.2e-242 841.6 605 71.6
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 6.7e-240 834.3 611 70.2
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 7.4e-239 830.9 724 62.2
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.7e-238 828.6 661 66.3
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.1e-237 827.0 695 63.9
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 4.1e-237 825.1 690 63.8
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 5.3e-237 824.7 661 65.8
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 6.5e-235 817.8 656 66.3
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.1e-234 817.0 669 65.5
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 9.4e-234 813.9 663 65.2
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 9.4e-234 813.9 663 65.2
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.6e-233 813.1 690 64.5
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 2.1e-233 812.8 667 63.4
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 3.6e-233 812.0 695 63.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-231 807.0 680 64.1
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.5e-231 806.6 690 63.3
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 3.3e-231 805.4 700 63.4
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 7.4e-231 804.3 669 63.7
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.7e-231 803.9 700 63.4
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 2.2e-230 802.7 673 62.3
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.2e-230 802.7 700 63.4
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 2.4e-229 799.3 659 64.5
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 9.1e-229 797.3 663 63.2
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.0e-228 796.2 673 64.5
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 2.6e-228 795.8 654 65.0
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 3.4e-228 795.4 682 64.2
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.2e-226 788.5 690 59.7
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 4.7e-225 785.0 670 62.2
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.3e-224 782.7 690 61.2
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 3.9e-224 781.9 691 59.9
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 2.0e-223 779.6 670 61.5
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.0e-219 767.3 678 61.7
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 8.5e-219 764.2 699 59.2
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.1e-218 763.8 685 62.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 7.2e-218 761.1 687 61.3
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 9.4e-218 760.8 671 59.9
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.0e-216 757.3 731 56.4
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.8e-216 756.5 701 57.8
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.8e-216 756.5 677 60.4
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 5.2e-216 755.0 594 67.2
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 2.8e-214 749.2 700 58.7
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 9.1e-213 744.2 685 57.8
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 7.7e-212 741.1 676 59.9
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.7e-209 732.6 608 63.8
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 3.6e-209 732.3 678 58.8
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 3.0e-208 729.2 637 60.6
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 3.0e-208 729.2 678 57.2
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 2.6e-207 726.1 676 57.2
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 4.4e-207 725.3 678 57.7
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.4e-207 725.3 612 63.1
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.1e-205 720.7 612 63.6
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.1e-205 719.2 617 61.6
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 7.2e-202 708.0 697 56.7
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 9.4e-202 707.6 704 55.3
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.6e-201 706.8 522 73.0
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.4e-200 703.7 611 62.0
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.8e-200 703.4 661 59.3
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 4.0e-200 702.2 712 54.1
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.2e-200 701.8 565 62.7
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.6e-199 699.5 683 56.4
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.6e-196 690.3 671 55.4
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 3.5e-196 689.1 683 55.9
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.3e-192 676.4 671 54.8
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 2.6e-191 672.9 671 54.5
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 5.7e-191 671.8 676 54.4
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 1.4e-189 667.2 681 54.9
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 8.0e-185 651.4 689 52.2
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 3.1e-184 649.4 689 52.1
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.9e-181 640.2 666 52.9
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 4.7e-177 625.5 548 61.5
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 1.1e-176 624.4 664 53.2
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 4.0e-160 569.3 497 61.8
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 1.7e-158 563.9 657 50.1
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-150 537.7 569 54.8
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 2.9e-150 536.6 448 62.7
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 3.0e-147 526.6 656 47.6
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.3e-146 523.1 662 47.3
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 7.4e-146 521.9 360 72.2
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 2.6e-143 513.5 622 47.7
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 9.3e-141 505.0 316 77.8
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.9e-138 497.3 694 43.4
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 6.9e-136 488.8 658 44.4
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 6.5e-134 482.3 679 42.4
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.1e-133 481.5 349 69.1
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.3e-130 469.9 445 58.7
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 6.5e-126 455.7 430 58.1
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.2e-125 453.0 373 63.0
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.3e-121 441.4 550 47.3
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-101 373.6 570 41.8
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 5.0e-86 323.2 278 63.7
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.8e-83 312.8 215 71.6
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 4.1e-80 303.5 342 52.0
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.9e-77 294.7 347 46.7
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.8e-75 286.2 194 70.6
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-74 284.3 206 69.4
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.5e-71 273.9 172 78.5
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.6e-70 269.6 264 57.2
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.6e-69 266.5 200 66.5
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.4e-67 261.9 207 66.2
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 9.8e-58 229.2 161 73.9
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.7e-57 228.4 199 61.3
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.2e-57 228.0 161 73.3
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.5e-50 205.3 171 60.2
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.1e-46 190.3 123 71.5
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.3e-45 187.2 156 63.5
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.9e-41 174.5 265 44.5
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 4.8e-36 157.1 106 72.6
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-32 145.6 93 76.3
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.2e-32 144.1 105 61.9
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.0e-30 137.9 97 70.1
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.9e-29 135.2 203 46.8
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 6.9e-27 126.7 307 31.3
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-26 125.6 80 78.8
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.7e-25 122.1 163 48.5
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 6.4e-25 120.2 92 69.6
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.5e-24 117.1 78 73.1
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 1.1e-21 109.4 71 67.6
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 7.4e-21 106.7 63 77.8
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 2.9e-17 94.7 82 56.1
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.8e-14 85.5 89 51.7
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.4e-11 75.9 45 71.1
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 5.3e-11 73.9 45 68.9
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 5.3e-11 73.9 45 68.9
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.2e-10 72.8 58 58.6
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 4.6e-07 60.8 38 68.4


User provided reference genes

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