Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 2095.9 1066 100.0
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1631.7 1072 81.2
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1452.2 1082 73.4
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1348.2 1043 68.6
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1328.5 1077 66.4
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1296.6 1071 63.8
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1292.7 1109 62.3
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1275.8 1071 63.2
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1271.9 1062 64.5
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1265.0 1092 62.5
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1263.8 1070 62.3
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1257.7 1074 61.3
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1256.5 1075 62.0
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1238.8 1071 61.6
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1236.9 1075 60.2
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1236.1 1067 61.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1234.2 1066 61.6
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1231.1 1071 61.2
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1230.3 1073 61.5
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1229.5 1068 61.0
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1228.4 1067 61.8
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1224.9 1077 61.3
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1218.0 1076 60.8
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1217.6 1071 60.8
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1217.2 1071 61.3
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1217.2 1072 60.8
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1215.3 1082 60.4
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1209.5 1072 59.9
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1195.6 1058 60.7
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1195.3 1075 60.1
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1191.8 1073 59.2
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1186.8 1078 60.1
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1182.2 1073 59.2
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1179.1 1069 59.7
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1178.7 1069 59.5
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1178.3 1071 60.0
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1178.3 1074 58.5
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1176.0 1073 58.8
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1175.2 1070 57.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1172.9 1073 58.2
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1164.8 1061 58.8
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1159.8 1063 58.2
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1159.4 1071 59.0
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1156.7 1072 57.2
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1153.7 1072 58.3
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1153.3 1072 58.9
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1152.9 1072 57.3
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1152.5 1100 56.8
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1151.7 1062 57.6
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1146.7 1064 57.5
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1140.6 1070 57.2
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1140.6 1071 57.0
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1138.3 1048 58.6
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1137.5 926 64.8
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1136.7 1071 57.3
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1136.3 1066 56.9
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1130.9 1087 56.7
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1130.9 1073 56.2
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1124.4 1048 58.5
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1121.3 1071 56.0
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1116.3 1068 57.9
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1115.5 1068 57.5
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1098.2 1063 55.9
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1097.8 1066 56.0
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1092.4 1096 54.1
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1077.4 1078 54.2
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 3.8e-303 1045.0 1006 56.6
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 7.2e-302 1040.8 1078 52.6
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.6e-301 1038.5 1088 54.0
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.2e-296 1023.5 1106 52.9
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 2.0e-296 1022.7 1073 52.0
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 2.0e-296 1022.7 1074 52.0
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 5.9e-296 1021.1 1073 53.9
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 1.3e-295 1020.0 1077 51.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 3.8e-295 1018.5 1081 51.6
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 2.7e-293 1012.3 1063 53.3
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.7e-293 1012.3 880 62.5
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 8.3e-290 1000.7 1056 52.4
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.1e-289 1000.3 1069 51.8
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 1.0e-287 993.8 1069 51.6
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 8.6e-287 990.7 922 56.9
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.5e-286 989.9 1079 50.9
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 9.5e-286 987.3 1073 51.4
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 2.1e-285 986.1 1079 51.1
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.0e-284 982.2 1076 52.3
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 4.4e-283 978.4 1033 53.7
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 3.7e-282 975.3 1089 50.8
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.5e-267 924.5 1032 49.6
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 1.2e-264 917.1 1078 48.3
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.9e-262 909.8 1049 48.2
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 4.7e-261 905.2 724 63.3
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 2.1e-253 879.8 801 58.6
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 3.0e-247 859.4 1061 47.8
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 6.4e-234 815.1 708 66.5
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.2e-232 810.8 620 70.8
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.9e-199 699.5 663 56.9
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.4e-198 696.0 663 56.7
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.9e-178 630.2 646 53.6
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.2e-174 618.2 598 58.2
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.3e-154 551.6 567 54.1
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 4.7e-152 543.1 1131 33.2
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 1.3e-149 535.0 1138 35.1
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 2.7e-139 500.7 377 69.2
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 3.5e-139 500.4 883 38.3
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 6.7e-106 389.8 421 51.3
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 5.5e-92 343.6 327 56.9
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 3.6e-91 340.9 851 32.4
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.6e-89 334.7 849 32.3
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.2e-80 305.1 464 39.2
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 4.5e-70 270.8 397 41.6
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 6.6e-61 240.4 265 52.1
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 3.5e-54 218.0 582 31.3
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 8.6e-53 213.4 239 51.5
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.7e-51 207.6 148 70.3
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 3.3e-44 184.9 148 66.2
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 5.2e-42 177.6 244 45.9
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.1e-36 159.8 147 51.0
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.2e-27 129.8 233 36.1
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 6.2e-27 127.5 179 43.6
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.1e-26 125.2 103 60.2
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.0e-25 122.5 128 54.7
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 4.2e-23 114.8 84 64.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 3.0e-21 108.6 407 26.8
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 6.6e-21 107.5 147 40.1
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 7.3e-20 104.0 220 36.4
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.6e-19 101.7 81 60.5
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.4e-18 99.8 81 59.3
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.4e-18 99.0 105 54.3
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 2.2e-16 92.4 77 55.8
PRCOL_00001784 Prasinoderma coloniale HOM05D005223 ORTHO05D006449 9.3e-15 87.0 355 30.1
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 4.6e-14 84.7 49 75.5
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 2.3e-13 82.4 144 38.9
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 3.0e-13 82.0 58 65.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 3.6e-11 75.1 59 61.0
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 6.2e-11 74.3 273 26.7
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 6.2e-11 74.3 55 63.6
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 6.2e-11 74.3 55 63.6
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 9.0e-10 70.5 805 22.1
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 9.0e-10 70.5 33 90.9
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 1.7e-08 66.2 52 59.6
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.2e-06 60.1 48 64.6


User provided reference genes

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