Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.0e-114 416.8 214 100.0
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.6e-67 260.0 186 80.6
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 4.8e-64 248.4 161 82.6
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 2.4e-63 246.1 161 82.0
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.0e-63 244.6 161 83.9
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.5e-60 236.1 161 81.4
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 4.0e-58 228.8 161 78.9
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 9.8e-57 224.2 161 77.6
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.1e-52 210.7 163 73.0
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 7.2e-52 208.0 163 70.6
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 8.8e-50 201.1 161 70.2
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 3.4e-49 199.1 153 72.5
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 5.7e-49 198.4 161 68.9
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 3.7e-48 195.7 166 69.3
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.9e-48 195.3 163 69.9
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.1e-47 194.1 163 68.1
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.4e-47 193.7 161 70.2
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.4e-47 191.8 158 68.4
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 9.2e-47 191.0 161 68.9
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.6e-46 190.3 161 67.7
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.6e-46 190.3 181 63.5
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.0e-46 189.9 162 68.5
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 5.9e-46 188.3 164 66.5
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 2.3e-45 186.4 158 63.3
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.3e-45 186.4 148 68.9
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 5.0e-45 185.3 158 65.8
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 8.6e-45 184.5 161 69.6
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.1e-44 184.1 153 66.0
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.1e-44 184.1 153 66.0
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.5e-44 183.7 155 69.7
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 2.5e-44 183.0 162 64.8
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.3e-44 182.6 159 65.4
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 3.3e-44 182.6 116 81.0
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.2e-43 180.6 192 58.9
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.6e-43 180.3 148 70.3
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.6e-43 180.3 160 65.0
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 2.1e-43 179.9 161 65.2
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 8.0e-43 177.9 161 65.2
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.3e-42 176.4 160 63.1
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 6.8e-42 174.9 161 64.0
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 8.9e-42 174.5 162 63.6
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.0e-41 173.3 161 63.4
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 2.0e-41 173.3 166 61.4
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.4e-41 172.2 160 66.2
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 7.5e-41 171.4 161 64.6
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.3e-40 170.6 164 62.2
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-40 170.6 160 63.1
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.7e-40 170.2 155 63.9
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.2e-40 169.9 161 63.4
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 2.2e-40 169.9 161 64.0
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 3.7e-40 169.1 155 62.6
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 8.3e-40 167.9 160 63.8
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 8.3e-40 167.9 162 66.0
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 8.3e-40 167.9 161 63.4
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.1e-39 167.5 153 66.0
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.1e-39 167.5 161 62.1
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.4e-39 167.2 144 66.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.8e-39 166.8 158 62.7
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 4.1e-39 165.6 163 60.7
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 4.1e-39 165.6 163 60.7
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 5.4e-39 165.2 142 64.8
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.2e-38 164.1 153 62.7
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.2e-38 164.1 223 53.4
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.5e-38 162.5 161 62.1
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 3.5e-38 162.5 152 62.5
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.6e-38 162.2 162 61.7
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.6e-38 162.2 159 60.4
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 5.9e-38 161.8 131 71.8
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.0e-37 161.0 150 64.7
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 2.3e-37 159.8 168 58.9
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.9e-37 159.1 162 61.7
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 5.0e-37 158.7 143 63.6
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.0e-37 158.7 162 61.1
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.0e-37 158.7 161 62.1
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.1e-36 157.5 154 57.8
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.1e-36 157.5 162 59.3
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 1.5e-36 157.1 138 67.4
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 1.5e-36 157.1 138 67.4
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.5e-36 157.1 136 66.9
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.9e-36 156.8 161 60.9
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 2.5e-36 156.4 158 60.1
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.3e-36 156.0 162 61.1
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.3e-36 155.6 205 50.2
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.3e-36 154.8 162 60.5
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.8e-35 152.9 165 61.2
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 4.7e-35 152.1 150 60.7
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 8.0e-35 151.4 150 60.7
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.4e-34 150.6 206 50.5
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 3.1e-34 149.4 160 57.5
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 4.0e-34 149.1 160 57.5
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 6.8e-34 148.3 144 59.7
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 8.9e-34 147.9 192 52.1
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.2e-33 147.5 167 53.3
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 3.4e-33 146.0 141 59.6
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 5.8e-33 145.2 146 58.2
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.8e-33 144.4 162 57.4
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 9.8e-33 144.4 164 56.7
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-32 144.1 153 58.2
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.2e-32 143.3 152 54.6
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.2e-32 143.3 148 58.8
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 3.7e-32 142.5 172 54.1
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 8.3e-32 141.4 145 58.6
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.1e-31 141.0 154 57.1
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.7e-30 136.3 141 57.4
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.7e-29 133.7 107 70.1
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 5.0e-29 132.1 148 52.0
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.5e-28 130.6 147 53.1
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.6e-28 128.6 161 51.6
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 5.6e-28 128.6 144 54.2
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.6e-28 128.6 118 62.7
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.8e-26 123.6 125 58.4
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.1e-26 122.9 135 57.8
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.2e-26 122.1 148 52.0
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 8.9e-26 121.3 125 57.6
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.5e-25 120.6 111 61.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.4e-25 119.4 161 49.7
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 5.8e-25 118.6 142 52.1
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.7e-24 117.1 154 48.7
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-23 114.0 162 50.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 2.4e-23 113.2 97 64.9
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 7.1e-23 111.7 154 48.1
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 9.2e-23 111.3 148 48.6
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.6e-22 110.5 85 71.8
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 3.5e-22 109.4 119 52.9
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.6e-22 109.0 152 45.4
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.3e-21 107.5 85 64.7
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 6.6e-21 105.1 133 52.6
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 2.5e-20 103.2 103 58.3
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.3e-20 102.8 82 65.9
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.6e-19 100.5 161 41.6
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 3.1e-18 96.3 87 65.5
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.1e-18 96.3 101 56.4
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 4.4e-17 92.4 83 62.7
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.9e-15 87.0 85 63.5
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 5.4e-15 85.5 56 73.2
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 1.5e-12 77.4 104 52.9
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 4.3e-12 75.9 282 30.5
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 5.6e-12 75.5 62 71.0
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.3e-12 75.1 76 53.9
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.6e-11 73.9 77 57.1
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.6e-11 73.9 77 57.1
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.6e-11 73.9 77 57.1
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 2.4e-10 70.1 148 39.9
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.9e-10 68.6 56 64.3
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.5e-09 67.4 55 60.0
A02p42760 Brassica napus HOM05D001512 ORTHO05D001574 1.3e-08 64.3 66 60.6
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 5.4e-07 58.9 59 49.2


User provided reference genes

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