Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 0.0e+00 1107.4 629 100.0
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 2.3e-231 805.8 587 81.6
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 3.0e-178 629.4 580 70.0
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 3.1e-167 592.8 600 64.3
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 1.9e-137 493.8 590 57.3
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 1.2e-134 484.6 502 65.9
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 2.6e-134 483.4 509 66.6
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 8.4e-133 478.4 497 64.0
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 1.4e-132 477.6 595 57.1
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 2.7e-131 473.4 600 55.3
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 1.0e-130 471.5 591 55.7
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 6.7e-130 468.8 549 58.8
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 5.7e-129 465.7 518 61.4
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.8e-127 460.7 507 62.3
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.0e-125 454.9 593 50.9
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 1.3e-125 454.5 598 52.2
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 2.9e-125 453.4 595 55.1
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 2.9e-125 453.4 500 61.8
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 2.9e-125 453.4 499 62.5
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 5.0e-125 452.6 500 60.4
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 5.0e-125 452.6 474 65.4
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.2e-124 449.9 500 60.2
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 7.2e-124 448.7 431 68.9
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 2.1e-123 447.2 528 58.0
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.3e-122 443.7 429 70.2
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.0e-122 443.4 500 60.0
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 9.7e-121 438.3 429 69.2
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 4.1e-119 433.0 429 68.5
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 2.9e-117 426.8 499 59.7
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 2.9e-117 426.8 587 55.4
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 3.8e-117 426.4 428 65.7
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 8.5e-117 425.2 437 66.1
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 6.1e-115 419.1 470 61.1
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.4e-114 417.9 534 57.5
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 5.1e-114 416.0 441 62.6
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 5.7e-113 412.5 426 65.5
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 9.7e-113 411.8 431 63.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.3e-112 411.4 432 62.7
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.3e-112 411.4 428 64.3
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 1.7e-112 411.0 430 63.7
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 2.2e-112 410.6 500 57.8
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 1.8e-111 407.5 432 62.7
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 6.9e-111 405.6 430 62.3
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 2.2e-109 400.6 585 52.8
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 2.9e-109 400.2 431 62.2
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 2.9e-109 400.2 500 57.0
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 2.5e-108 397.1 428 64.7
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 2.5e-108 397.1 445 61.1
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 5.5e-108 396.0 496 58.5
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 4.7e-107 392.9 481 56.8
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 3.0e-106 390.2 511 56.6
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 2.0e-105 387.5 435 59.8
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 2.0e-105 387.5 429 61.5
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 2.6e-105 387.1 369 71.8
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 9.7e-105 385.2 442 58.6
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 1.3e-104 384.8 590 51.4
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 2.2e-104 384.0 529 54.8
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 8.2e-104 382.1 428 61.2
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.8e-103 380.9 513 55.9
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 4.5e-102 376.3 434 59.0
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 3.8e-101 373.2 439 58.8
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 3.2e-100 370.2 430 59.5
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 7.2e-100 369.0 490 53.7
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 7.2e-100 369.0 430 58.6
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.2e-99 368.2 513 53.2
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.7e-99 367.1 424 60.8
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 6.7e-98 362.5 603 49.6
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 3.3e-97 360.1 434 59.0
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 5.7e-97 359.4 435 60.2
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 7.5e-97 359.0 495 55.8
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 2.8e-96 357.1 428 60.5
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 3.7e-96 356.7 383 48.3
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 3.7e-96 356.7 383 48.3
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 3.1e-95 353.6 392 64.3
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.1e-92 345.1 424 59.9
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 1.2e-91 341.7 442 56.8
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 2.1e-91 340.9 428 57.5
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.7e-91 340.5 429 41.7
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 5.7e-89 332.8 442 56.1
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 8.3e-88 328.9 496 53.4
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 7.7e-86 322.4 597 46.9
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 2.3e-85 320.9 428 54.0
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 3.8e-85 320.1 495 52.5
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 6.5e-85 319.3 518 49.6
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 1.9e-84 317.8 560 48.2
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 3.3e-84 317.0 432 54.4
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 1.2e-83 315.1 494 51.6
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 1.6e-83 314.7 432 54.2
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 8.9e-82 308.9 399 59.4
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 3.5e-78 297.0 432 50.5
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 4.5e-78 296.6 390 58.2
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 2.5e-76 290.8 491 51.5
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.3e-69 267.7 565 44.8
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 2.9e-64 250.8 446 50.9
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 1.4e-63 248.4 431 47.1
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.4e-63 248.4 431 47.1
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 6.6e-61 239.6 387 51.4
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 2.2e-56 224.6 204 52.5
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 2.4e-55 221.1 343 37.0
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 2.4e-55 221.1 343 37.0
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 9.2e-55 219.2 201 52.2
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 5.2e-50 203.4 193 51.3
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 7.3e-44 183.0 303 36.0
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 1.0e-29 136.0 177 46.9
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 5.3e-10 70.5 148 33.8
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 5.3e-10 70.5 435 18.9
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 2.6e-09 68.2 136 24.3
EL10Ac5g11024 Beta vulgaris HOM05D000001 ORTHO05D009806 3.4e-09 67.8 160 26.9
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 4.5e-09 67.4 138 30.4
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 7.7e-09 66.6 138 29.7
CARHR156170 Cardamine hirsuta HOM05D000001 ORTHO05D009806 1.7e-08 65.5 157 28.0
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 2.9e-08 64.7 142 26.1
SMO275G0048 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 2.9e-08 64.7 149 29.5
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 5.0e-08 63.9 140 25.0
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 5.0e-08 63.9 140 25.0
SalBow5G5026 Salvia bowleyana HOM05D000001 ORTHO05D000003 6.5e-08 63.5 196 25.5
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 8.5e-08 63.2 138 29.0
BcaB02g10696 Brassica carinata HOM05D000001 ORTHO05D009806 1.1e-07 62.8 154 27.9
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.1e-07 62.8 156 26.9
Thhalv10010230m.g Eutrema salsugineum HOM05D000001 ORTHO05D009806 1.4e-07 62.4 158 28.5
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 1.4e-07 62.4 138 29.0
Sp5g14350 Schrenkiella parvula HOM05D000001 ORTHO05D009806 1.9e-07 62.0 155 28.4
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 1.9e-07 62.0 52 57.7
Aa31LG4G16320 Aethionema arabicum HOM05D000001 ORTHO05D009806 2.5e-07 61.6 183 26.8
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 2.5e-07 61.6 142 27.5
AL5G26770 Arabidopsis lyrata HOM05D000001 ORTHO05D009806 2.5e-07 61.6 160 26.9
C03p67080 Brassica napus HOM05D000001 ORTHO05D009806 2.5e-07 61.6 158 27.8
CANSAT80G2247 Cannabis sativa HOM05D000001 ORTHO05D009806 2.5e-07 61.6 197 25.9
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 3.2e-07 61.2 543 19.5
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 3.2e-07 61.2 431 19.5
BcaC01g02280 Brassica carinata HOM05D000001 ORTHO05D009806 4.2e-07 60.8 158 27.8
BolC3t18982H Brassica oleracea HOM05D000001 ORTHO05D009806 4.2e-07 60.8 158 27.8
Nitab4.5_0000556g0140 Nicotiana tabacum HOM05D000162 ORTHO05D000090 4.2e-07 60.8 151 29.1
PSO173G0027 Papaver somniferum HOM05D000001 ORTHO05D010435 4.2e-07 60.8 261 21.8
BraA06t25663Z Brassica rapa HOM05D000001 ORTHO05D009806 5.5e-07 60.5 158 26.6
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 5.5e-07 60.5 417 18.9
Lsat_1_v5_gn_6_940 Lactuca sativa HOM05D000001 ORTHO05D009054 7.2e-07 60.1 172 25.6
AUR62008421 Chenopodium quinoa HOM05D000001 ORTHO05D009806 9.4e-07 59.7 158 29.1
ECA236G0805 Erigeron canadensis HOM05D000001 ORTHO05D009054 1.2e-06 59.3 172 25.6
Peaxi162Scf00274g00056 Petunia axillaris HOM05D000001 ORTHO05D009806 1.2e-06 59.3 200 26.5
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 1.2e-06 59.3 106 27.4
AUR62021674 Chenopodium quinoa HOM05D000001 ORTHO05D009806 1.6e-06 58.9 198 26.3
A06p27200 Brassica napus HOM05D000001 ORTHO05D009806 2.1e-06 58.5 158 26.6
FAN28G0931 Fragaria x ananassa HOM05D000001 ORTHO05D010467 2.1e-06 58.5 253 24.1
PSO566G0001 Papaver somniferum HOM05D000001 ORTHO05D010435 2.1e-06 58.5 261 20.7
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 2.1e-06 58.5 129 26.4
Eucgr.B00510 Eucalyptus grandis HOM05D000001 ORTHO05D009806 2.7e-06 58.2 199 26.6
Medtr1g090120 Medicago truncatula HOM05D002479 ORTHO05D002675 2.7e-06 58.2 146 26.7
ATR0618G281 Amborella trichopoda HOM05D003056 ORTHO05D003422 3.6e-06 57.8 118 27.1
HanXRQChr10g0287051 Helianthus annuus HOM05D000001 ORTHO05D009054 3.6e-06 57.8 172 24.4
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 3.6e-06 57.8 106 27.4
Carub.0005s1362 Capsella rubella HOM05D000001 ORTHO05D009806 4.6e-06 57.4 155 27.7
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.6e-06 57.4 156 25.6
FAN05G1182 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.6e-06 57.4 195 22.1
Cpa.g.sc423.6 Carica papaya HOM05D000001 ORTHO05D009806 6.1e-06 57.0 158 26.6
FvH4_1g25550 Fragaria vesca HOM05D000001 ORTHO05D010467 6.1e-06 57.0 253 24.1
Lalb_Chr21g0312681 Lupinus albus HOM05D002479 ORTHO05D002675 6.1e-06 57.0 146 25.3
Medtr0001s0430 Medicago truncatula HOM05D002785 ORTHO05D003042 6.1e-06 57.0 171 23.4
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 6.1e-06 57.0 138 26.8
FAN19G1731 Fragaria x ananassa HOM05D000001 ORTHO05D010467 7.9e-06 56.6 253 24.1
Nitab4.5_0006000g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009806 7.9e-06 56.6 195 24.1


User provided reference genes

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