Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.7e-108 394.8 189 100.0
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.3e-84 316.6 196 82.1
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.5e-77 290.8 189 75.1
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.7e-65 253.1 189 67.7
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.3e-64 248.4 188 65.4
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.2e-63 246.9 189 64.6
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.8e-62 241.1 186 64.0
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.0e-61 239.6 189 63.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.3e-60 236.9 189 62.4
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.7e-60 236.5 185 64.3
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.2e-60 236.1 189 63.0
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.9e-60 235.7 184 64.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 5.4e-59 231.5 196 61.7
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.2e-58 230.3 184 63.0
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.1e-58 229.6 185 63.2
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.7e-58 229.2 185 61.1
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 3.9e-57 225.3 186 61.3
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.1e-57 224.9 182 59.3
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 5.1e-57 224.9 188 61.7
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 6.6e-57 224.6 188 60.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.1e-56 223.8 188 61.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.9e-56 223.0 191 59.2
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.9e-56 223.0 182 62.6
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.5e-56 222.6 189 61.4
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.5e-56 222.6 188 59.6
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.5e-56 222.6 188 59.6
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 3.3e-56 222.2 188 60.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 5.6e-56 221.5 187 59.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 9.5e-56 220.7 180 60.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.1e-55 219.5 194 60.3
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 2.8e-55 219.2 177 61.6
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.8e-55 219.2 182 62.6
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 8.1e-55 217.6 184 59.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.1e-55 217.6 183 59.0
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.1e-54 217.2 161 67.1
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.4e-54 216.9 191 60.7
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 2.3e-54 216.1 226 52.2
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 3.1e-54 215.7 181 60.2
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.0e-54 215.3 185 60.0
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.2e-53 213.8 189 58.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.5e-53 213.4 176 61.4
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.5e-53 213.4 182 58.2
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.0e-53 213.0 184 60.9
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 3.4e-53 212.2 188 57.4
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 4.4e-53 211.8 180 60.6
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 5.8e-53 211.5 170 61.2
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 5.8e-53 211.5 191 60.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 7.5e-53 211.1 169 60.4
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-52 209.9 191 59.2
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-52 209.9 191 59.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.2e-52 209.5 185 58.4
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.2e-52 209.5 191 59.7
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-52 209.5 181 60.2
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.9e-52 209.1 173 61.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.7e-52 208.8 184 55.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 3.7e-52 208.8 184 57.6
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 6.4e-52 208.0 176 60.2
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 8.3e-52 207.6 191 59.2
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.4e-51 206.8 193 56.0
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.4e-51 206.8 187 57.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.4e-51 206.8 176 59.1
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.9e-51 206.5 191 59.2
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.9e-51 206.5 187 56.7
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.9e-51 206.5 193 56.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.1e-51 205.3 161 59.0
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 5.4e-51 204.9 185 56.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 7.1e-51 204.5 172 59.3
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 7.1e-51 204.5 183 59.0
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 7.1e-51 204.5 187 56.7
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 9.2e-51 204.1 198 56.1
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.6e-50 203.4 187 57.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.1e-50 203.0 162 59.3
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.1e-50 203.0 193 54.9
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.1e-50 203.0 193 54.9
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.7e-50 202.6 161 61.5
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.7e-50 202.6 191 56.0
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 3.5e-50 202.2 184 57.1
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.5e-50 202.2 164 61.6
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.5e-50 202.2 173 56.6
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 3.5e-50 202.2 161 57.8
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 3.5e-50 202.2 193 54.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 4.6e-50 201.8 161 61.5
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.6e-50 201.8 193 54.9
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.6e-50 201.8 161 61.5
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 6.0e-50 201.4 171 57.3
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.0e-50 201.4 161 61.5
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.0e-50 201.4 161 60.9
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.0e-49 200.7 175 58.3
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.0e-49 200.7 187 54.5
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.0e-49 200.7 221 52.0
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.3e-49 200.3 164 60.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-49 200.3 190 53.7
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.3e-49 200.3 183 56.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.7e-49 199.9 162 59.9
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.7e-49 199.9 172 58.7
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.0e-49 199.1 160 61.2
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.9e-49 198.7 162 59.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.9e-49 198.7 172 58.1
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 5.1e-49 198.4 187 55.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 8.6e-49 197.6 178 56.2
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 5.6e-48 194.9 164 59.1
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 5.6e-48 194.9 164 60.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 5.6e-48 194.9 176 56.8
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.2e-47 193.7 193 53.4
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.6e-47 193.4 189 55.0
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.8e-47 192.6 180 55.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.8e-47 192.6 161 57.8
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 3.6e-47 192.2 177 57.1
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 6.2e-47 191.4 179 55.9
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 6.2e-47 191.4 162 59.9
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.4e-46 190.3 146 62.3
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.8e-46 189.9 158 63.3
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.0e-45 186.4 160 55.6
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 9.9e-45 184.1 183 52.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.3e-44 183.7 179 52.5
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 2.9e-44 182.6 188 52.7
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 8.4e-44 181.0 162 59.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 4.6e-42 175.3 148 58.1
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 6.0e-42 174.9 160 54.4
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 7.8e-42 174.5 190 52.6
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.0e-41 174.1 142 60.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-39 167.2 159 53.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.6e-39 166.8 149 54.4
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.1e-34 149.8 154 48.7
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.0e-33 146.0 157 47.8
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 5.6e-32 141.7 155 44.5
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 8.1e-31 137.9 174 48.9
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.0e-30 134.4 118 53.4
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.4e-29 132.5 138 52.2
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.9e-29 131.0 136 52.9
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.4e-27 127.1 73 72.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 7.1e-27 124.8 73 75.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.3e-23 114.0 117 48.7
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.6e-23 113.6 147 40.8
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.6e-23 113.6 111 53.2
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 6.2e-23 111.7 64 73.4
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 3.1e-22 109.4 65 67.7
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 5.5e-19 98.6 62 75.8
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.9e-17 92.4 145 33.8
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 6.2e-15 85.1 153 31.4
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.1e-14 82.8 91 48.4
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.0e-12 77.8 64 67.2
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.5e-08 63.9 35 77.1
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.1e-06 57.8 58 44.8


User provided reference genes

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