Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 9.4e-300 1032.7 508 100.0
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 5.4e-247 857.4 508 84.3
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.1e-220 770.0 492 76.2
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 3.3e-212 741.9 472 78.6
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.3e-208 729.9 497 74.0
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.1e-204 716.8 492 72.0
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.4e-181 640.2 495 64.8
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 3.9e-181 638.6 497 64.2
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 9.1e-178 627.5 493 62.7
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 8.5e-176 620.9 493 62.5
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.4e-175 620.2 496 62.3
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.2e-174 617.1 493 63.7
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.1e-172 610.5 500 62.4
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 9.7e-172 607.4 497 62.0
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 2.2e-171 606.3 518 59.3
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 9.1e-170 600.9 493 61.9
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.2e-169 600.5 495 60.6
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.6e-169 600.1 503 61.0
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 2.6e-169 599.4 497 60.4
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.5e-167 593.6 493 59.8
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 1.0e-165 587.4 503 59.2
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.4e-165 587.0 504 59.3
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.2e-164 583.9 493 60.6
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 2.8e-163 579.3 499 59.5
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 8.3e-163 577.8 496 59.1
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.2e-161 573.9 484 59.1
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 7.7e-161 571.2 483 59.0
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 1.7e-160 570.1 465 63.2
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 2.9e-160 569.3 474 59.9
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 6.5e-160 568.2 500 57.6
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 1.6e-158 563.5 528 55.9
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 2.1e-158 563.1 493 56.8
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 2.1e-158 563.1 500 57.0
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 2.1e-158 563.1 499 58.5
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 3.0e-157 559.3 495 57.6
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 3.0e-157 559.3 497 56.7
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.2e-156 557.4 495 57.4
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 3.4e-156 555.8 521 56.0
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 4.4e-156 555.4 497 56.1
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.3e-155 553.9 494 57.1
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.7e-155 553.5 498 57.4
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 3.7e-155 552.4 427 63.7
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 4.8e-155 552.0 497 56.7
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 8.3e-155 551.2 498 57.0
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 1.8e-154 550.1 494 57.1
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 5.4e-154 548.5 499 55.5
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 5.4e-154 548.5 499 55.5
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 9.1e-154 547.7 499 55.3
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 1.2e-153 547.4 498 56.0
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.2e-153 547.4 499 56.3
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.9e-153 545.0 497 56.1
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 2.8e-150 536.2 499 54.5
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 2.8e-150 536.2 497 54.5
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 3.6e-150 535.8 497 55.7
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 8.0e-150 534.6 497 55.7
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 1.0e-149 534.3 500 57.0
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 3.0e-149 532.7 498 54.6
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 5.2e-149 531.9 501 54.1
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 2.0e-148 530.0 430 63.5
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 4.4e-148 528.9 494 55.3
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 7.5e-148 528.1 493 56.0
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 9.2e-146 521.2 501 55.1
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 7.8e-145 518.1 400 62.5
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 2.2e-139 500.0 514 51.6
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 1.4e-138 497.3 435 57.5
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 5.4e-138 495.4 427 58.1
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 4.7e-134 482.3 438 58.0
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 4.7e-134 482.3 398 60.1
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.4e-133 480.7 498 52.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 8.3e-131 471.5 495 50.7
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.1e-130 471.1 493 49.7
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 7.0e-130 468.4 480 51.5
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 6.0e-129 465.3 498 50.2
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 2.5e-127 459.9 500 49.8
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 4.0e-125 452.6 504 49.4
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 3.4e-124 449.5 498 48.6
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.1e-122 444.5 507 46.7
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 3.3e-119 433.0 367 59.7
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 5.6e-119 432.2 262 80.9
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 9.9e-116 421.4 533 45.4
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 8.4e-115 418.3 430 50.7
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.5e-111 406.8 554 42.8
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 5.6e-111 405.6 498 45.8
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 9.9e-108 394.8 398 51.8
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.4e-106 391.0 504 45.6
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.1e-95 354.8 521 42.0
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.6e-94 350.9 635 37.5
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 1.8e-88 330.9 448 43.1
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.6e-86 324.3 530 39.6
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.1e-82 311.6 400 44.2
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.9e-82 310.8 400 44.2
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 3.8e-75 286.6 262 55.7
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.6e-73 280.0 265 55.8
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 1.7e-67 261.2 208 62.0
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 5.1e-64 249.6 285 48.8
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 1.7e-62 244.6 494 33.4
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 7.5e-47 192.6 200 52.5
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 2.8e-46 190.7 343 36.4
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 2.4e-45 187.6 345 38.0
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.3e-43 181.8 217 49.3
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.1e-37 162.2 200 46.0
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 7.0e-37 159.5 171 48.0
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 7.2e-34 149.4 490 31.4
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 5.7e-31 139.8 257 34.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.3e-30 138.7 177 43.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 7.5e-23 112.8 119 47.9
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.7e-22 111.7 171 39.8
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.2e-22 111.3 114 45.6
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 6.8e-16 89.7 94 47.9
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 5.4e-13 80.1 96 43.8


User provided reference genes

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