Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.4e-107 391.0 190 100.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.1e-75 287.0 206 68.4
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.3e-72 275.4 196 71.9
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.2e-68 262.7 205 64.4
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.1e-66 256.1 205 63.4
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 8.6e-65 250.8 207 60.9
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 2.1e-63 246.1 206 60.7
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.6e-63 245.4 203 57.1
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 4.7e-63 245.0 204 60.8
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 8.1e-63 244.2 204 57.8
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.1e-62 242.3 205 58.5
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 5.2e-62 241.5 206 59.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 5.2e-62 241.5 206 56.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 6.8e-62 241.1 206 56.8
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 8.9e-62 240.7 206 56.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 2.0e-61 239.6 168 73.2
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.6e-61 239.2 204 56.9
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.4e-61 238.8 207 57.5
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 4.4e-61 238.4 206 57.8
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 5.8e-61 238.0 206 55.3
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.6e-61 237.7 217 56.2
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.3e-60 236.9 207 58.0
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.3e-60 236.9 205 59.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.3e-60 236.9 206 56.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.9e-60 235.7 206 59.2
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.9e-60 235.7 205 59.0
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 9.3e-59 230.7 207 58.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.7e-58 229.2 204 55.9
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 6.0e-58 228.0 204 56.4
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 7.8e-58 227.6 201 57.2
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.0e-57 225.7 206 52.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.0e-57 225.7 202 55.9
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.9e-57 225.3 204 57.8
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 3.9e-57 225.3 191 58.6
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 5.1e-57 224.9 206 54.9
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 5.1e-57 224.9 206 51.5
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 6.6e-57 224.6 206 54.4
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 8.7e-57 224.2 207 53.1
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.1e-56 223.8 206 57.8
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 3.3e-56 222.2 207 52.7
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.3e-56 221.9 205 54.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.6e-55 219.9 205 54.6
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.1e-55 219.5 188 55.9
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.8e-55 218.4 211 54.5
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 6.2e-55 218.0 206 54.9
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.1e-54 217.2 174 59.2
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.1e-54 217.2 206 51.5
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.1e-54 217.2 205 51.7
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 2.4e-54 216.1 205 52.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.4e-54 216.1 204 55.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 4.0e-54 215.3 206 52.4
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.0e-54 215.3 189 58.7
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.3e-54 214.9 206 54.9
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 6.9e-54 214.5 203 50.7
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 6.9e-54 214.5 206 53.4
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 9.0e-54 214.2 217 50.7
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.0e-53 213.0 203 54.7
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.0e-53 213.0 207 53.6
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.6e-53 212.6 204 54.4
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.4e-53 212.2 228 51.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.4e-53 212.2 204 54.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.3e-52 210.3 231 47.6
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 2.2e-52 209.5 205 50.2
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.9e-52 209.1 203 49.3
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.8e-52 208.8 205 50.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.8e-52 208.8 205 50.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 4.9e-52 208.4 207 50.7
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 8.4e-52 207.6 200 52.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-51 207.2 205 50.2
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 3.2e-51 205.7 199 50.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.6e-50 203.4 207 48.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.1e-50 203.0 205 52.2
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 2.7e-50 202.6 206 49.5
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 3.5e-50 202.2 205 52.7
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 4.6e-50 201.8 203 49.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.0e-50 201.4 216 47.2
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 6.0e-50 201.4 203 48.8
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 7.9e-50 201.1 203 47.8
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 7.9e-50 201.1 204 50.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.7e-49 199.9 201 49.3
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.0e-49 199.1 204 50.0
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 5.1e-49 198.4 203 47.8
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 5.1e-49 198.4 203 47.8
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-48 197.2 201 49.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.1e-48 197.2 201 49.3
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.5e-48 196.1 201 49.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.3e-48 195.7 187 52.4
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 4.3e-48 195.3 203 47.8
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.3e-48 194.5 185 53.0
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.3e-47 193.7 183 50.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-47 193.7 203 48.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.3e-47 193.7 203 46.8
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.3e-47 193.7 203 48.3
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-47 193.4 201 46.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.6e-47 193.4 201 46.8
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-47 192.6 203 46.8
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.8e-47 192.6 228 49.1
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.8e-47 192.6 206 46.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.8e-47 191.8 203 47.8
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 4.8e-47 191.8 202 49.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.8e-47 191.8 202 48.0
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-46 190.3 201 46.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.4e-46 190.3 203 46.8
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.4e-46 190.3 205 48.3
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.4e-46 189.5 243 42.4
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 9.0e-46 187.6 187 49.7
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 2.0e-45 186.4 166 54.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 7.6e-45 184.5 228 43.4
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 9.9e-45 184.1 167 56.3
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 9.9e-45 184.1 187 46.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.9e-43 179.9 167 55.1
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 9.3e-43 177.6 206 45.6
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.1e-42 176.4 204 42.6
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.7e-42 176.0 205 45.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 6.0e-42 174.9 226 42.5
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.3e-41 173.7 192 51.6
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.3e-41 173.7 205 45.4
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.3e-41 173.7 199 44.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.1e-41 171.8 188 46.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 8.7e-41 171.0 168 53.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.2e-39 164.9 231 45.9
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 8.1e-39 164.5 189 42.9
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 4.0e-38 162.2 168 53.0
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.8e-30 136.7 198 35.9
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 6.9e-30 134.8 198 34.3
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 3.4e-29 132.5 133 50.4
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.1e-27 127.5 75 85.3
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 9.3e-27 124.4 98 62.2
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 6.1e-26 121.7 144 40.3
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.5e-24 116.3 107 52.3
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.7e-23 112.5 77 58.4
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.4e-22 110.5 161 34.2
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.1e-22 109.4 108 54.6
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 5.9e-21 105.1 108 50.0
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.9e-20 102.8 75 73.3
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 5.0e-20 102.1 69 56.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 8.2e-15 84.7 53 58.5
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.1e-14 84.3 75 57.3
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 6.9e-14 81.6 102 48.0
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-13 80.1 64 48.4
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.4e-11 73.9 75 56.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 3.0e-09 66.2 41 63.4
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 3.9e-09 65.9 31 77.4
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.7e-09 65.1 60 55.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 5.7e-08 62.0 37 70.3
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 4.8e-07 58.9 37 59.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 8.2e-07 58.2 71 42.3
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 8.2e-07 58.2 40 52.5
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 4.1e-06 55.8 26 76.9


User provided reference genes

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