Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 3.8e-58 228.0 120 100.0
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 6.5e-18 94.4 58 82.8
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.2e-16 90.1 108 44.4
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 7.0e-12 74.3 62 58.1
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 7.0e-12 74.3 62 58.1
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 7.0e-12 74.3 62 58.1
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 9.1e-12 73.9 60 61.7
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.2e-11 73.6 58 67.2
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.2e-11 73.6 61 73.8
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 3.5e-11 72.0 60 63.3
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.5e-11 71.6 53 64.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.9e-11 71.2 60 60.0
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 7.7e-11 70.9 58 72.4
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.0e-10 70.5 58 58.6
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.3e-10 70.1 58 56.9
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.3e-10 70.1 57 54.4
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.3e-10 69.3 62 56.5
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 2.3e-10 69.3 39 74.4
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.3e-10 69.3 60 60.0
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 2.3e-10 69.3 39 74.4
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 3.8e-10 68.6 56 60.7
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 3.8e-10 68.6 38 78.9
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 6.6e-10 67.8 37 81.1
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 6.6e-10 67.8 60 55.0
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 6.6e-10 67.8 58 62.1
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 6.6e-10 67.8 54 70.4
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 6.6e-10 67.8 44 65.9
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 6.6e-10 67.8 60 70.0
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 8.6e-10 67.4 38 76.3
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 8.6e-10 67.4 41 68.3
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.1e-09 67.0 62 54.8
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.1e-09 67.0 49 61.2
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.5e-09 66.6 58 62.1
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.9e-09 66.2 39 71.8
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.9e-09 66.2 39 74.4
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.5e-09 65.9 58 53.4
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 2.5e-09 65.9 51 66.7
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 2.5e-09 65.9 41 68.3
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.5e-09 65.9 38 73.7
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 3.3e-09 65.5 51 56.9
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 3.3e-09 65.5 58 58.6
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 3.3e-09 65.5 58 55.2
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 4.2e-09 65.1 39 71.8
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 4.2e-09 65.1 54 59.3
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 4.2e-09 65.1 58 62.1
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 4.2e-09 65.1 58 60.3
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 4.2e-09 65.1 58 60.3
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 5.5e-09 64.7 38 68.4
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 5.5e-09 64.7 60 56.7
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 5.5e-09 64.7 42 69.0
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 5.5e-09 64.7 56 57.1
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 7.2e-09 64.3 58 55.2
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 7.2e-09 64.3 38 71.1
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.2e-09 64.3 38 71.1
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.2e-09 64.3 54 57.4
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 7.2e-09 64.3 38 71.1
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 9.5e-09 63.9 39 71.8
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 9.5e-09 63.9 39 71.8
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 9.5e-09 63.9 58 51.7
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 9.5e-09 63.9 39 69.2
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.2e-08 63.5 48 58.3
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.2e-08 63.5 58 56.9
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.2e-08 63.5 58 56.9
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.2e-08 63.5 39 71.8
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.6e-08 63.2 39 69.2
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.6e-08 63.2 53 52.8
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.6e-08 63.2 53 52.8
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 2.1e-08 62.8 53 52.8
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 2.1e-08 62.8 53 52.8
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 2.1e-08 62.8 53 52.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 2.1e-08 62.8 58 63.8
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.1e-08 62.8 58 53.4
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.1e-08 62.8 38 71.1
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 2.8e-08 62.4 53 52.8
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.8e-08 62.4 58 50.0
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 2.8e-08 62.4 42 61.9
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 3.6e-08 62.0 39 64.1
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 4.7e-08 61.6 58 51.7
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 4.7e-08 61.6 58 51.7
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 4.7e-08 61.6 39 66.7
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 4.7e-08 61.6 58 51.7
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 4.7e-08 61.6 58 51.7
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 4.7e-08 61.6 58 51.7
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 4.7e-08 61.6 39 66.7
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 4.7e-08 61.6 58 67.2
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 4.7e-08 61.6 40 62.5
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 6.1e-08 61.2 55 54.5
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 6.1e-08 61.2 39 64.1
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 6.1e-08 61.2 39 61.5
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 8.0e-08 60.8 39 59.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 8.0e-08 60.8 43 60.5
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.0e-07 60.5 39 69.2
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.0e-07 60.5 51 51.0
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.0e-07 60.5 39 61.5
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 1.0e-07 60.5 39 61.5
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.0e-07 60.5 57 50.9
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.4e-07 60.1 39 66.7
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.4e-07 60.1 38 63.2
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.4e-07 60.1 39 64.1
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.4e-07 60.1 39 61.5
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 1.8e-07 59.7 41 58.5
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-07 59.7 40 62.5
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 3.0e-07 58.9 38 65.8
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 3.0e-07 58.9 39 61.5
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 4.0e-07 58.5 39 61.5
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 4.0e-07 58.5 39 59.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 6.8e-07 57.8 51 58.8
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 6.8e-07 57.8 58 53.4
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 6.8e-07 57.8 39 64.1
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.2e-06 57.0 38 57.9
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 2.0e-06 56.2 37 62.2
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.0e-06 56.2 49 59.2
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.6e-06 55.8 71 42.3
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 3.4e-06 55.5 38 60.5
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 4.4e-06 55.1 115 33.9
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 7.5e-06 54.3 37 56.8
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 9.8e-06 53.9 57 45.6
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 9.8e-06 53.9 52 42.3
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 9.8e-06 53.9 39 51.3


User provided reference genes

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