Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18979 Vaccinium macrocarpon HOM05D006629 ORTHO05D008430 3.1e-99 365.2 186 100.0
Rhsim08G0214800 Rhododendron simsii HOM05D006629 ORTHO05D008430 1.5e-69 266.5 187 77.5
CSS0009902 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 1.0e-65 253.8 188 71.8
CSS0049498 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 4.6e-63 245.0 184 69.6
Actinidia15782 Actinidia chinensis HOM05D006629 ORTHO05D008430 2.0e-61 239.6 184 71.7
Haze_16533 Corylus avellana HOM05D006629 ORTHO05D008430 2.9e-57 225.7 186 68.3
Prupe.3G083500 Prunus persica HOM05D006629 ORTHO05D008430 5.0e-57 224.9 186 66.1
vmacro23010 Vaccinium macrocarpon HOM05D006629 ORTHO05D008430 5.0e-57 224.9 116 99.1
RcHm_v2.0_Chr2g0136021 Rosa chinensis HOM05D006629 ORTHO05D008430 5.1e-54 214.9 189 64.6
Cc04_g04220 Coffea canephora HOM05D006629 ORTHO05D008430 6.7e-54 214.5 188 64.4
Nn8g39443 Nelumbo nucifera HOM05D006629 ORTHO05D008430 8.8e-54 214.2 186 65.1
TAR383G1031 Trochodendron aralioides HOM05D006629 ORTHO05D008430 8.8e-54 214.2 186 64.0
Manes.04G115000 Manihot esculenta HOM05D006629 ORTHO05D008430 1.5e-53 213.4 185 64.9
QL05p028345 Quercus lobata HOM05D006629 ORTHO05D008430 1.5e-53 213.4 187 64.2
FAN02G3434 Fragaria x ananassa HOM05D006629 ORTHO05D008430 4.4e-53 211.8 190 61.6
FvH4_6g30000 Fragaria vesca HOM05D006629 ORTHO05D008430 9.7e-53 210.7 190 62.1
FAN14G1255 Fragaria x ananassa HOM05D006629 ORTHO05D008430 9.7e-53 210.7 190 62.1
SalBow2G3434 Salvia bowleyana HOM05D006629 ORTHO05D008430 1.7e-52 209.9 186 61.3
Aqoxy7G03710 Aquilegia oxysepala HOM05D006629 ORTHO05D008430 3.7e-52 208.8 179 64.8
Migut.I00787 Erythranthe guttata HOM05D006629 ORTHO05D008430 6.3e-52 208.0 187 62.6
CiPaw.01G246000 Carya illinoinensis HOM05D006629 ORTHO05D008430 1.4e-51 206.8 186 62.4
CAN.G407.97 Capsicum annuum HOM05D006629 ORTHO05D008430 1.8e-51 206.5 190 61.1
Nitab4.5_0001764g0020 Nicotiana tabacum HOM05D006629 ORTHO05D008430 2.4e-51 206.1 190 61.1
Phvul.005G176800 Phaseolus vulgaris HOM05D006629 ORTHO05D008430 2.4e-51 206.1 157 69.4
SGA_v2.0_scaffold5G02676 Striga asiatica HOM05D006629 ORTHO05D008430 2.4e-51 206.1 181 58.6
Cpa.g.sc10.240 Carica papaya HOM05D006629 ORTHO05D008430 3.1e-51 205.7 173 65.9
Nitab4.5_0010254g0040 Nicotiana tabacum HOM05D006629 ORTHO05D008430 4.1e-51 205.3 190 61.1
Eucgr.F02534 Eucalyptus grandis HOM05D006629 ORTHO05D008430 5.3e-51 204.9 186 62.9
Ah.01g020720 Amaranthus hybridus HOM05D006629 ORTHO05D008430 9.1e-51 204.1 172 64.5
Solyc03g116570.3 Solanum lycopersicum HOM05D006629 ORTHO05D008430 1.2e-50 203.8 188 60.6
MBI01_g40020_MAGBIO Magnolia biondii HOM05D006629 ORTHO05D008430 2.0e-50 203.0 197 59.9
MBI01_g47382_MAGBIO Magnolia biondii HOM05D006629 ORTHO05D008430 2.0e-50 203.0 186 61.8
Oeu052266.1 Olea europaea HOM05D006629 ORTHO05D008430 2.0e-50 203.0 186 62.9
MSTRG.11130 Avicennia marina HOM05D006629 ORTHO05D008430 2.6e-50 202.6 186 58.6
Sopen03g035480 Solanum pennellii HOM05D006629 ORTHO05D008430 2.6e-50 202.6 188 60.1
PGSC0003DMG400000613 Solanum tuberosum HOM05D006629 ORTHO05D008430 2.6e-50 202.6 188 59.6
Gohir.A06G186400 Gossypium hirsutum HOM05D006629 ORTHO05D008430 3.5e-50 202.2 186 60.8
Gohir.D06G192700 Gossypium hirsutum HOM05D006629 ORTHO05D008430 3.5e-50 202.2 186 60.8
Atru.chr1.3007 Acer truncatum HOM05D006629 ORTHO05D008430 4.5e-50 201.8 185 61.1
Gorai.010G226500 Gossypium raimondii HOM05D006629 ORTHO05D008430 7.7e-50 201.1 186 60.8
Ciclev10026597m.g Citrus clementina HOM05D006629 ORTHO05D008430 1.0e-49 200.7 186 60.2
Duzib235G0045 Durio zibethinus HOM05D006629 ORTHO05D008430 1.0e-49 200.7 186 60.2
Potri.008G213200 Populus trichocarpa HOM05D006629 ORTHO05D008430 2.2e-49 199.5 163 65.6
VMungo1080G1280 Vigna mungo HOM05D006629 ORTHO05D008430 2.9e-49 199.1 188 61.2
EL10Ac9g21916 Beta vulgaris HOM05D006629 ORTHO05D008430 3.8e-49 198.7 185 61.1
Sc23g0006680 Simmondsia chinensis HOM05D006629 ORTHO05D008430 5.0e-49 198.4 164 65.2
ClCG07G012710 Citrullus lanatus HOM05D006629 ORTHO05D008430 1.1e-48 197.2 154 68.2
MELO3C017890.2 Cucumis melo HOM05D006629 ORTHO05D008430 1.1e-48 197.2 154 67.5
CsaV3_4G001490 Cucumis sativus L. HOM05D006629 ORTHO05D008430 1.1e-48 197.2 154 68.2
Sabra08G0150000 Salix brachista HOM05D006629 ORTHO05D008430 1.1e-48 197.2 154 66.9
Sed0005686 Sechium edule HOM05D006629 ORTHO05D008430 1.1e-48 197.2 164 65.2
Lj5C70G0 Lonicera japonica HOM05D006629 ORTHO05D008430 1.4e-48 196.8 188 59.6
Lj3g0011933 Lotus japonicus HOM05D006629 ORTHO05D008430 1.9e-48 196.4 184 61.4
Rhsim04G0187300 Rhododendron simsii HOM05D006629 ORTHO05D008430 3.2e-48 195.7 139 75.5
Lalb_Chr22g0350921 Lupinus albus HOM05D006629 ORTHO05D008430 4.2e-48 195.3 157 66.2
MD00G1022200 Malus domestica HOM05D006629 ORTHO05D008430 4.2e-48 195.3 167 64.7
HanXRQChr12g0361441 Helianthus annuus HOM05D006629 ORTHO05D008430 5.5e-48 194.9 183 60.7
Medtr2g103590 Medicago truncatula HOM05D006629 ORTHO05D008430 5.5e-48 194.9 179 60.9
Glyma.13G364600 Glycine max HOM05D006629 ORTHO05D008430 9.4e-48 194.1 158 66.5
PSO017G2975 Papaver somniferum HOM05D006629 ORTHO05D008430 9.4e-48 194.1 185 60.0
TPR.G37207 Trifolium pratense HOM05D006629 ORTHO05D008430 9.4e-48 194.1 178 61.8
ECA234G2539 Erigeron canadensis HOM05D006629 ORTHO05D008430 1.6e-47 193.4 164 64.6
Lsat_1_v5_gn_5_131321 Lactuca sativa HOM05D006629 ORTHO05D008430 1.6e-47 193.4 167 63.5
PGR102G3125 Punica granatum HOM05D006629 ORTHO05D008430 1.6e-47 193.4 187 58.8
BcaB04g17151 Brassica carinata HOM05D006629 ORTHO05D008430 4.7e-47 191.8 186 59.7
Thhalv10011823m.g Eutrema salsugineum HOM05D006629 ORTHO05D008430 4.7e-47 191.8 186 57.5
FAN09G3876 Fragaria x ananassa HOM05D006629 ORTHO05D008430 6.1e-47 191.4 243 50.2
Sp1g39150 Schrenkiella parvula HOM05D006629 ORTHO05D008430 8.0e-47 191.0 186 59.1
A08p02130 Brassica napus HOM05D006629 ORTHO05D008430 1.0e-46 190.7 186 59.1
C03p90690 Brassica napus HOM05D006629 ORTHO05D008430 1.0e-46 190.7 186 59.1
BcaC01g01330 Brassica carinata HOM05D006629 ORTHO05D008430 1.4e-46 190.3 186 59.1
BolC3t21390H Brassica oleracea HOM05D006629 ORTHO05D008430 1.4e-46 190.3 186 59.1
CARHR042720 Cardamine hirsuta HOM05D006629 ORTHO05D008430 1.4e-46 190.3 173 60.1
DCAR_025501 Daucus carota HOM05D006629 ORTHO05D008430 1.4e-46 190.3 188 55.9
Thecc.06G069100 Theobroma cacao HOM05D006629 ORTHO05D008430 3.0e-46 189.1 157 65.6
Carub.0001s4159 Capsella rubella HOM05D006629 ORTHO05D008430 3.9e-46 188.7 186 58.6
Ca_01063_v3 Cicer arietinum L. HOM05D006629 ORTHO05D008430 3.9e-46 188.7 177 59.9
AL1G60870 Arabidopsis lyrata HOM05D006629 ORTHO05D008430 5.2e-46 188.3 173 59.0
BraA08t32260Z Brassica rapa HOM05D006629 ORTHO05D008430 5.2e-46 188.3 186 58.6
THA.LOC104818030 Tarenaya hassleriana HOM05D006629 ORTHO05D008430 5.2e-46 188.3 186 57.0
Eucgr.F02111 Eucalyptus grandis HOM05D006629 ORTHO05D008430 6.7e-46 188.0 136 72.1
Hma1.2p1_0042F.1_g025470 Hydrangea macrophylla HOM05D006629 ORTHO05D008430 6.7e-46 188.0 135 72.6
unitig_52.g17452 Utricularia gibba HOM05D006629 ORTHO05D008430 8.8e-46 187.6 186 57.5
AT1G52590 Arabidopsis thaliana HOM05D006629 ORTHO05D008430 2.0e-45 186.4 186 57.0
TWI18G0931 Tripterygium wilfordii HOM05D006629 ORTHO05D008430 5.7e-45 184.9 172 59.9
Hund00536 Selenicereus undatus HOM05D006629 ORTHO05D008430 2.4e-43 179.5 177 57.1
Dinv30585 Davidia involucrata HOM05D006629 ORTHO05D008430 3.1e-43 179.1 161 65.2
Peaxi162Scf00332g00758 Petunia axillaris HOM05D006629 ORTHO05D008430 4.1e-43 178.7 191 56.5
CDE06G1467 Ceratophyllum demersum HOM05D006629 ORTHO05D008430 2.6e-42 176.0 191 53.9
Aa31LG10G2420 Aethionema arabicum HOM05D006629 ORTHO05D008430 3.5e-42 175.6 186 54.8
ATR0322G059 Amborella trichopoda HOM05D006629 ORTHO05D008430 4.5e-42 175.3 160 58.1
GSVIVG01017300001 Vitis vinifera HOM05D006629 ORTHO05D008430 2.9e-41 172.6 94 91.5
CDE04G2501 Ceratophyllum demersum HOM05D006629 ORTHO05D008430 8.5e-41 171.0 188 53.2
PSO170G1412 Papaver somniferum HOM05D006629 ORTHO05D008430 4.2e-40 168.7 127 68.5
AUR62016355 Chenopodium quinoa HOM05D006629 ORTHO05D008430 4.7e-39 165.2 94 87.2
Zm00001eb122820 Zea mays HOM05D006629 ORTHO05D008430 4.0e-38 162.2 168 55.4
AUR62011536 Chenopodium quinoa HOM05D006629 ORTHO05D008430 6.3e-36 154.8 88 88.6
HPP92_021817 Vanilla planifolia HOM05D006629 ORTHO05D008430 8.3e-36 154.5 176 50.6
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 7.0e-35 151.4 95 78.9
Psat5g301760 Pisum sativum HOM05D006629 ORTHO05D008430 1.5e-32 143.7 145 57.9
Mapoly0033s0027 Marchantia polymorpha HOM05D006629 ORTHO05D008430 2.3e-30 136.3 173 44.5
MBI14_g42957_MAGBIO Magnolia biondii HOM05D006629 ORTHO05D008430 4.0e-30 135.6 95 73.7
COL.COLO4_12927 Corchorus olitorius HOM05D006629 ORTHO05D008430 2.8e-28 129.4 174 47.1
vmacro23011 Vaccinium macrocarpon HOM05D006629 ORTHO05D008430 4.1e-27 125.6 68 95.6
SMO266G0086 Selaginella moellendorffii HOM05D006629 ORTHO05D008430 5.9e-26 121.7 129 48.8
Os01g0173000 Oryza sativa ssp. japonica HOM05D006629 ORTHO05D008430 5.0e-25 118.6 109 60.6
Pp3c1_15690 Physcomitrium patens HOM05D006629 ORTHO05D008430 2.5e-24 116.3 166 39.2
Cre14.g622750 Chlamydomonas reinhardtii HOM05D006629 ORTHO05D008430 3.6e-23 112.5 131 45.8
PRCOL_00001525 Prasinoderma coloniale HOM05D006629 ORTHO05D008430 7.5e-21 104.8 133 44.4
MCO16G483 Micromonas commoda HOM05D006629 ORTHO05D008430 1.8e-19 100.1 145 40.0
Glyma.15G009100 Glycine max HOM05D006629 ORTHO05D008430 2.7e-18 96.3 55 81.8
Lj3g0020878 Lotus japonicus HOM05D006629 ORTHO05D008430 5.6e-16 88.6 53 83.0
SEGI_11602 Sequoiadendron giganteum HOM05D006629 ORTHO05D008430 9.8e-13 77.8 58 58.6
SEGI_23999 Sequoiadendron giganteum HOM05D006629 ORTHO05D008430 9.8e-13 77.8 58 58.6
Zm00001eb421390 Zea mays HOM05D006629 ORTHO05D008430 2.0e-10 70.1 54 64.8
Zm00001eb108740 Zea mays HOM05D006629 ORTHO05D008430 2.7e-10 69.7 48 68.8
Zm00001eb227190 Zea mays HOM05D002349 ORTHO05D002464 3.5e-10 69.3 54 63.0
PRCOL_00002946 Prasinoderma coloniale HOM05D006629 ORTHO05D049056 1.3e-09 67.4 114 37.7
CDE04G3384 Ceratophyllum demersum HOM05D001690 ORTHO05D009096 5.0e-09 65.5 94 43.6
FAN05G0483 Fragaria x ananassa HOM05D006629 ORTHO05D008430 1.1e-08 64.3 75 49.3
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 1.5e-08 63.9 104 36.5
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 1.9e-08 63.5 104 36.5
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 1.9e-08 63.5 104 36.5
FvH4_4g35000 Fragaria vesca HOM05D001690 ORTHO05D009096 1.9e-08 63.5 94 41.5
FAN12G1851 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.9e-08 63.5 94 41.5
Sp1g21410 Schrenkiella parvula HOM05D001690 ORTHO05D009096 2.5e-08 63.2 104 36.5
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 3.3e-08 62.8 104 36.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 3.3e-08 62.8 104 35.6
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.3e-08 62.4 104 35.6
Atru.chr11.1963 Acer truncatum HOM05D001690 ORTHO05D009096 5.6e-08 62.0 92 42.4
Psat2g111480 Pisum sativum HOM05D001690 ORTHO05D009096 7.3e-08 61.6 94 38.3
Thhalv10008745m.g Eutrema salsugineum HOM05D001690 ORTHO05D009096 9.5e-08 61.2 104 36.5
FAN07G2318 Fragaria x ananassa HOM05D001690 ORTHO05D009096 9.5e-08 61.2 94 40.4
FAN22G0616 Fragaria x ananassa HOM05D001690 ORTHO05D009096 9.5e-08 61.2 94 40.4
Thecc.02G242600 Theobroma cacao HOM05D001690 ORTHO05D009096 9.5e-08 61.2 104 37.5
unitig_699.g19928 Utricularia gibba HOM05D001690 ORTHO05D009096 1.2e-07 60.8 104 36.5
DCAR_026553 Daucus carota HOM05D001690 ORTHO05D009096 1.6e-07 60.5 94 36.2
TPR.G13490 Trifolium pratense HOM05D001690 ORTHO05D009096 1.6e-07 60.5 94 38.3
Aqoxy3G03080 Aquilegia oxysepala HOM05D001690 ORTHO05D009096 2.1e-07 60.1 93 40.9
arahy.Tifrunner.gnm1.ann1.00SZA6 Arachis hypogaea HOM05D001690 ORTHO05D009096 2.1e-07 60.1 94 39.4
MCO09G691 Micromonas commoda HOM05D006629 ORTHO05D049056 2.8e-07 59.7 90 43.3
AT1G24095 Arabidopsis thaliana HOM05D001690 ORTHO05D009096 3.6e-07 59.3 104 33.7
Rhsim12G0050200 Rhododendron simsii HOM05D001690 ORTHO05D009096 3.6e-07 59.3 104 33.7
Lsat_1_v5_gn_4_6521 Lactuca sativa HOM05D001690 ORTHO05D009096 4.7e-07 58.9 94 36.2
Medtr5g035310 Medicago truncatula HOM05D001690 ORTHO05D009096 4.7e-07 58.9 94 37.2
MSTRG.621 Avicennia marina HOM05D001690 ORTHO05D009096 8.0e-07 58.2 94 37.2
HanXRQChr04g0103621 Helianthus annuus HOM05D001690 ORTHO05D009096 1.1e-06 57.8 104 34.6
Haze_12139 Corylus avellana HOM05D001690 ORTHO05D009096 1.8e-06 57.0 94 36.2
Hma1.2p1_0160F.1_g070590 Hydrangea macrophylla HOM05D001690 ORTHO05D009096 1.8e-06 57.0 94 35.1
Cfa009103 Carpinus fangiana HOM05D001690 ORTHO05D009096 2.3e-06 56.6 94 37.2
Ciclev10033984m.g Citrus clementina HOM05D001690 ORTHO05D009096 2.3e-06 56.6 104 35.6
Zm00001eb371950 Zea mays HOM05D001690 ORTHO05D009096 4.0e-06 55.8 92 35.9
HPP92_017336 Vanilla planifolia HOM05D001690 ORTHO05D009096 5.2e-06 55.5 93 39.8
SEGI_04544 Sequoiadendron giganteum HOM05D001690 ORTHO05D009096 8.9e-06 54.7 104 36.5


User provided reference genes

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