Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 6.8e-72 273.9 135 100.0
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 3.8e-38 161.8 116 72.4
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.7e-36 155.6 116 70.7
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 5.1e-27 124.8 115 61.7
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 6.9e-24 114.4 110 52.7
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 3.5e-20 102.1 108 50.9
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.3e-19 100.1 115 48.7
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.8e-19 99.8 113 48.7
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.3e-19 99.4 109 48.6
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 3.0e-19 99.0 111 47.7
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 8.7e-19 97.4 110 49.1
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 3.3e-18 95.5 112 47.3
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 4.3e-18 95.1 85 60.0
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 9.6e-18 94.0 104 51.0
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 2.1e-17 92.8 113 48.7
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.8e-17 92.4 102 51.0
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 8.1e-17 90.9 114 46.5
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.1e-16 90.5 113 46.9
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.8e-16 89.7 119 47.9
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-16 89.7 114 45.6
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.4e-16 89.4 112 44.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 4.0e-16 88.6 114 46.5
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 5.3e-16 88.2 111 45.9
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 6.9e-16 87.8 110 47.3
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.2e-15 87.0 119 47.1
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.2e-15 87.0 115 47.8
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.5e-15 86.7 113 46.9
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 1.5e-15 86.7 102 52.0
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 1.5e-15 86.7 108 46.3
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 2.0e-15 86.3 120 45.0
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 2.0e-15 86.3 118 44.1
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 2.0e-15 86.3 118 44.1
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.4e-15 85.5 114 43.0
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.8e-15 84.7 111 44.1
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 7.6e-15 84.3 107 41.1
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 7.6e-15 84.3 111 45.0
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 1.3e-14 83.6 113 42.5
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.7e-14 83.2 111 43.2
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 2.2e-14 82.8 104 46.2
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 2.9e-14 82.4 111 43.2
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.8e-14 82.0 109 43.1
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 4.9e-14 81.6 127 40.9
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 6.4e-14 81.3 106 43.4
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 8.4e-14 80.9 105 44.8
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.4e-13 80.1 103 48.5
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.9e-13 79.7 105 45.7
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 4.2e-13 78.6 106 41.5
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.2e-12 77.0 79 53.2
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 1.2e-12 77.0 89 51.7
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 1.2e-12 77.0 103 41.7
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.6e-12 76.6 107 43.0
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.1e-12 76.3 79 54.4
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 3.5e-12 75.5 108 38.9
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.5e-12 75.5 114 42.1
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 4.6e-12 75.1 116 43.1
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 4.6e-12 75.1 108 38.0
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 7.9e-12 74.3 111 44.1
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 1.0e-11 73.9 119 40.3
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.0e-11 73.9 104 44.2
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.3e-11 73.6 115 40.0
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.3e-11 73.6 115 40.9
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 1.8e-11 73.2 81 51.9
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.3e-11 72.8 81 50.6
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 2.3e-11 72.8 76 52.6
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.3e-11 72.8 74 55.4
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 2.3e-11 72.8 108 39.8
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 3.9e-11 72.0 112 41.1
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 5.1e-11 71.6 111 42.3
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 6.7e-11 71.2 105 37.1
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 8.7e-11 70.9 117 43.6
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 8.7e-11 70.9 70 55.7
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.1e-10 70.5 70 50.0
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 1.5e-10 70.1 111 41.4
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 3.3e-10 68.9 71 49.3
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 3.3e-10 68.9 72 51.4
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 5.6e-10 68.2 82 46.3
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.6e-09 66.6 61 52.5
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.1e-09 66.2 112 38.4
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.1e-09 66.2 109 38.5
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 2.1e-09 66.2 112 37.5
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 2.8e-09 65.9 68 51.5
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 2.8e-09 65.9 96 42.7
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 3.7e-09 65.5 111 42.3
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 4.8e-09 65.1 66 48.5
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 4.8e-09 65.1 109 39.4
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 4.8e-09 65.1 109 38.5
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 6.2e-09 64.7 69 50.7
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 8.2e-09 64.3 74 48.6
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 8.2e-09 64.3 103 39.8
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 1.1e-08 63.9 105 41.9
Sp3g14370 Schrenkiella parvula HOM05D015723 ORTHO05D003275 1.1e-08 63.9 103 39.8
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 1.4e-08 63.5 101 40.6
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.4e-08 63.5 105 39.0
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.4e-08 62.8 79 44.3
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 2.4e-08 62.8 116 37.9
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 3.1e-08 62.4 79 43.0
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.0e-08 62.0 91 41.8
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 5.3e-08 61.6 66 50.0
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 5.3e-08 61.6 75 41.3
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 6.9e-08 61.2 97 40.2
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 6.9e-08 61.2 67 47.8
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 6.9e-08 61.2 100 39.0
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 6.9e-08 61.2 107 36.4
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 9.0e-08 60.8 64 54.7
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.5e-07 60.1 80 40.0
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 1.5e-07 60.1 112 37.5
Carub.0003s1575 Capsella rubella HOM05D015723 ORTHO05D003275 2.0e-07 59.7 105 36.2
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 2.6e-07 59.3 123 34.1
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.6e-07 59.3 108 38.9
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.6e-07 59.3 73 47.9
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.4e-07 58.9 63 52.4
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.4e-07 58.9 70 44.3
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 4.5e-07 58.5 76 42.1
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 4.5e-07 58.5 64 48.4
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 4.5e-07 58.5 104 39.4
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.8e-07 58.2 63 52.4
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.8e-07 58.2 63 52.4
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.8e-07 58.2 64 50.0
COL.COLO4_26960 Corchorus olitorius HOM05D003277 ORTHO05D003275 5.8e-07 58.2 92 38.0
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 7.6e-07 57.8 73 41.1
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 7.6e-07 57.8 104 37.5
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 7.6e-07 57.8 69 46.4
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.0e-06 57.4 93 34.4
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 1.0e-06 57.4 66 50.0
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.0e-06 57.4 75 44.0
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 1.0e-06 57.4 69 46.4
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 1.3e-06 57.0 77 49.4
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.7e-06 56.6 61 47.5
Lsat_1_v5_gn_8_93781 Lactuca sativa HOM05D000750 ORTHO05D000714 1.7e-06 56.6 61 41.0
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.7e-06 56.6 74 43.2
BraA01t03867Z Brassica rapa HOM05D015723 ORTHO05D003275 2.2e-06 56.2 111 36.0
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.2e-06 56.2 109 34.9
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 2.2e-06 56.2 70 45.7
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 2.9e-06 55.8 72 43.1
BcaB04g20880 Brassica carinata HOM05D015723 ORTHO05D003275 3.8e-06 55.5 108 37.0
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 3.8e-06 55.5 77 49.4
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 4.9e-06 55.1 111 35.1
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.9e-06 55.1 61 44.3
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 4.9e-06 55.1 76 44.7
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 4.9e-06 55.1 63 47.6
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 6.5e-06 54.7 110 34.5
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 6.5e-06 54.7 46 60.9
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 8.4e-06 54.3 79 44.3
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 8.4e-06 54.3 68 44.1
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 8.4e-06 54.3 109 39.4
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 8.4e-06 54.3 109 39.4
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 8.4e-06 54.3 89 41.6
HPP92_008676 Vanilla planifolia HOM05D003277 ORTHO05D003275 8.4e-06 54.3 65 47.7


User provided reference genes

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