Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.9e-148 529.3 281 100.0
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 3.9e-98 362.1 285 74.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.7e-88 328.9 276 70.3
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 2.4e-87 326.2 278 69.8
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.5e-86 322.4 278 70.1
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 3.2e-84 315.8 277 71.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 3.2e-84 315.8 279 66.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 7.2e-84 314.7 275 66.9
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.2e-81 307.4 279 67.7
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.2e-81 307.4 277 66.4
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 2.0e-81 306.6 274 65.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.7e-80 303.5 278 64.7
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.2e-80 303.1 280 65.0
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.8e-80 302.0 275 66.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 8.2e-80 301.2 277 65.3
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.4e-79 300.4 274 66.4
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 7.0e-79 298.1 285 64.6
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.7e-78 296.2 276 64.5
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.9e-78 295.0 276 64.1
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 2.2e-77 293.1 278 64.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 8.5e-77 291.2 275 65.8
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 8.5e-77 291.2 277 63.5
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.9e-76 290.0 273 65.9
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.9e-76 290.0 275 65.5
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.2e-76 288.9 277 63.5
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.2e-75 287.3 278 63.7
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.1e-75 286.6 273 64.1
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 3.6e-75 285.8 273 64.8
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 6.1e-75 285.0 278 62.9
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.4e-74 283.9 277 64.6
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.3e-74 283.1 279 62.0
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 5.2e-74 282.0 280 62.5
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 6.8e-74 281.6 282 63.1
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.8e-74 281.6 265 65.3
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 6.8e-74 281.6 274 64.2
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 6.8e-74 281.6 278 63.7
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.2e-73 280.8 298 59.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 3.4e-73 279.3 277 62.5
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.4e-73 278.9 271 63.8
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.4e-73 278.9 276 61.6
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.3e-72 277.3 277 61.4
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.3e-72 277.3 273 64.1
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.2e-72 276.6 275 63.6
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.2e-72 276.6 271 60.5
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 8.3e-72 274.6 274 63.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 8.3e-72 274.6 266 64.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.4e-71 273.9 272 60.7
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.4e-71 273.9 271 60.5
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.8e-71 273.5 275 60.7
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.1e-71 272.7 276 59.1
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 5.4e-71 271.9 264 63.6
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.4e-71 271.9 269 63.2
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.6e-70 270.4 277 61.4
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.0e-70 270.0 276 58.7
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 4.5e-70 268.9 276 60.1
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 7.7e-70 268.1 277 59.9
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.0e-69 267.7 278 61.2
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.3e-69 267.3 277 60.6
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.3e-69 266.5 277 58.8
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.8e-69 265.8 275 60.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 6.5e-69 265.0 278 60.1
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.5e-68 263.8 271 59.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.5e-68 263.1 278 61.5
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 2.5e-68 263.1 277 60.3
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 4.2e-68 262.3 273 59.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 5.5e-68 261.9 266 58.6
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 7.2e-68 261.5 279 60.6
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.6e-67 260.4 273 58.2
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.8e-67 259.6 279 60.6
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.6e-67 259.2 279 58.8
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 3.6e-67 259.2 268 59.3
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 3.6e-67 259.2 278 59.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.7e-67 258.8 278 60.1
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.7e-67 258.8 277 61.0
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 6.1e-67 258.5 268 59.3
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 8.0e-67 258.1 269 59.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.4e-66 257.3 368 47.3
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-66 256.9 270 59.3
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.8e-66 256.9 269 59.5
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 6.8e-66 255.0 263 58.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 8.9e-66 254.6 266 57.5
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.6e-65 253.1 267 58.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.6e-65 253.1 280 60.0
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 3.4e-65 252.7 264 59.1
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.7e-65 251.9 263 58.9
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 7.5e-65 251.5 277 58.8
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 7.5e-65 251.5 275 60.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.7e-64 250.4 278 57.2
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.7e-64 250.4 266 58.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 4.9e-64 248.8 270 59.3
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.1e-63 247.7 223 63.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.4e-63 247.3 268 60.1
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.8e-63 246.9 270 55.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 4.1e-63 245.7 219 64.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.2e-62 244.2 265 57.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 4.5e-62 242.3 268 56.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 7.8e-62 241.5 241 58.1
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.3e-61 240.0 312 52.6
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-61 240.0 284 54.6
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.9e-61 239.6 268 56.0
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 5.0e-61 238.8 236 58.5
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.2e-59 234.2 267 55.4
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 4.7e-59 232.3 267 56.9
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 3.0e-58 229.6 282 52.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 6.8e-58 228.4 268 54.5
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 8.9e-58 228.0 236 58.5
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 3.4e-57 226.1 271 55.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.4e-57 225.7 277 53.4
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 9.8e-57 224.6 272 55.5
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.2e-56 223.4 273 52.0
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.2e-56 223.4 274 52.9
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.3e-53 213.4 356 45.2
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 8.6e-53 211.5 273 50.2
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.2e-51 207.6 132 79.5
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.8e-51 206.5 190 61.6
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.2e-51 205.3 170 65.3
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.4e-50 204.1 269 51.3
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-50 203.4 165 70.3
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.1e-50 203.0 309 46.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.8e-50 201.8 275 48.7
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.6e-49 199.9 148 75.7
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.2e-47 193.0 140 72.9
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.6e-46 190.7 265 52.1
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 9.5e-44 181.4 274 43.8
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.2e-43 181.0 268 47.4
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.3e-37 161.0 181 56.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.1e-35 153.7 269 43.9
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.2e-33 147.9 162 56.8
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.6e-33 146.7 362 36.5
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.4e-31 140.2 114 72.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.3e-29 134.4 268 39.9
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.1e-27 127.1 109 65.1
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 6.2e-27 125.6 246 37.4
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-25 121.3 173 50.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.9e-24 116.7 165 46.7
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.7e-22 110.2 82 81.7
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.0e-21 108.2 58 84.5
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.8e-18 97.4 266 32.3
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 3.1e-18 96.7 252 32.1
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 7.6e-17 92.0 283 33.9
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 5.6e-12 75.9 64 67.2
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 6.4e-08 62.4 118 39.0
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-07 61.2 57 54.4
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.9e-07 60.8 34 76.5
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.6e-06 57.8 121 36.4
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.7e-06 57.0 28 92.9
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 7.9e-06 55.5 88 42.0


User provided reference genes

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