Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.6e-149 532.7 265 100.0
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 9.3e-142 506.9 265 95.8
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 6.0e-141 504.2 265 95.1
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.3e-139 498.4 265 93.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-138 496.5 265 93.6
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.3e-138 496.5 264 93.6
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.3e-138 496.5 265 94.3
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.2e-138 495.7 265 94.0
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.8e-138 495.4 265 93.6
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 2.8e-138 495.4 265 93.6
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 6.3e-138 494.2 265 93.2
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 8.2e-138 493.8 265 92.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 8.2e-138 493.8 265 92.5
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.8e-137 492.7 263 95.1
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.1e-137 491.9 264 92.4
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 9.0e-137 490.3 269 90.7
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.2e-136 490.0 264 92.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.5e-136 489.6 264 91.7
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.5e-136 489.6 264 92.4
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.0e-136 489.2 262 93.1
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.5e-136 488.0 265 91.3
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 4.5e-136 488.0 265 92.1
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.3e-135 486.5 265 91.7
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.7e-135 486.1 265 90.9
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 2.9e-135 485.3 265 91.7
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 5.0e-135 484.6 265 90.2
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 6.5e-135 484.2 265 90.9
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.1e-134 483.4 265 90.9
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 1.4e-134 483.0 265 90.9
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.4e-134 483.0 265 90.9
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.4e-134 483.0 265 90.6
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.4e-134 483.0 265 90.6
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 3.2e-134 481.9 265 90.9
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 3.2e-134 481.9 265 90.2
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 3.2e-134 481.9 265 90.2
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.2e-134 481.5 265 89.4
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 4.2e-134 481.5 264 90.5
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 5.5e-134 481.1 265 90.2
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 7.2e-134 480.7 265 89.8
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 9.4e-134 480.3 265 89.8
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.6e-133 479.6 265 90.2
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.6e-133 479.6 265 89.4
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.1e-133 479.2 265 90.2
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 2.1e-133 479.2 265 89.4
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 2.1e-133 479.2 265 89.4
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 2.1e-133 479.2 265 89.4
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.7e-133 478.8 265 89.4
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.6e-133 478.4 265 89.4
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 3.6e-133 478.4 265 89.4
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 3.6e-133 478.4 265 89.4
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 4.6e-133 478.0 265 88.7
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 6.1e-133 477.6 265 89.1
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 6.1e-133 477.6 265 89.4
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 6.1e-133 477.6 265 89.4
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 6.1e-133 477.6 265 90.2
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 7.9e-133 477.2 265 89.4
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.0e-132 476.9 265 89.1
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.8e-132 476.1 265 88.7
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.8e-132 476.1 265 88.7
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-132 476.1 265 88.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.8e-132 476.1 265 89.4
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.3e-132 475.7 265 89.1
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.3e-132 475.7 265 88.7
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 3.9e-132 474.9 265 88.7
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 5.1e-132 474.6 265 89.8
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.7e-132 474.2 265 89.1
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 6.7e-132 474.2 265 89.1
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.5e-131 472.2 265 88.3
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.5e-131 472.2 265 88.3
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 5.7e-131 471.1 265 87.9
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 9.7e-131 470.3 265 88.3
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.7e-130 469.5 265 87.5
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.7e-130 469.5 265 87.5
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.7e-130 469.5 265 88.7
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.2e-130 469.2 265 89.1
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.2e-130 469.2 265 87.2
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 2.2e-130 469.2 260 89.2
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.8e-130 468.8 265 87.2
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.8e-130 468.8 265 87.9
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.8e-130 468.8 265 87.5
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 6.3e-130 467.6 265 88.3
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 8.2e-130 467.2 265 87.5
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.1e-129 466.8 265 87.2
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.1e-129 466.8 265 87.2
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.8e-129 466.1 265 88.3
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.8e-129 466.1 265 86.8
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.8e-129 466.1 265 86.8
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.4e-129 465.7 265 88.7
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.4e-129 465.7 265 88.7
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 9.1e-129 463.8 265 86.8
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.2e-128 463.4 265 87.2
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.5e-128 463.0 265 85.7
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.6e-128 462.2 265 85.3
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 2.6e-128 462.2 265 87.5
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 4.5e-128 461.5 265 85.3
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 7.7e-128 460.7 265 85.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 1.0e-127 460.3 289 81.3
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.3e-127 459.9 265 86.8
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.7e-127 459.5 265 87.2
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.2e-127 459.1 265 86.4
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 5.0e-127 458.0 264 87.1
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 5.0e-127 458.0 264 87.1
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 5.0e-127 458.0 265 86.0
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 8.5e-127 457.2 265 86.8
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 8.5e-127 457.2 265 86.8
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 8.5e-127 457.2 265 84.9
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.1e-126 456.8 265 87.5
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.1e-126 456.8 265 85.3
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-126 456.4 265 86.4
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.4e-126 456.4 281 82.6
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.9e-126 456.1 265 86.4
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 3.2e-126 455.3 265 84.5
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 5.5e-126 454.5 263 87.1
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 5.5e-126 454.5 263 87.1
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 7.2e-126 454.1 265 84.2
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 9.4e-126 453.8 264 86.4
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.6e-125 453.0 265 84.9
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 2.1e-125 452.6 265 86.0
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 3.9e-124 448.4 264 84.8
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.9e-124 448.4 244 91.8
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 6.7e-124 447.6 265 84.5
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 8.8e-124 447.2 265 84.2
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.3e-123 445.3 265 81.9
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.3e-123 445.3 265 82.3
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.1e-121 440.3 265 81.9
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.1e-121 440.3 260 83.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 5.3e-121 438.0 265 82.3
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 7.0e-121 437.6 265 83.0
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 3.5e-120 435.3 265 82.3
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.5e-120 434.9 245 87.8
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-119 433.3 245 87.3
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.2e-117 426.8 280 77.9
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.0e-116 423.7 265 84.5
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 9.7e-115 417.2 217 95.4
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.7e-114 416.4 265 78.9
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.7e-114 416.4 265 78.9
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.7e-114 415.2 265 81.1
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.1e-113 413.7 265 81.5
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 2.6e-112 409.1 265 73.6
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.3e-111 406.8 265 76.6
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.7e-111 406.4 265 76.2
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.5e-110 401.4 270 76.3
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.7e-109 399.1 337 63.8
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.7e-109 398.3 309 70.6
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 3.3e-107 392.1 226 86.7
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.1e-105 387.1 205 92.2
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 7.0e-105 384.4 258 76.7
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 7.0e-105 384.4 244 79.1
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 6.8e-100 367.9 199 88.4
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 5.4e-97 358.2 204 87.3
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.5e-94 348.2 261 73.6
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 4.9e-90 335.1 264 63.3
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.5e-86 322.8 181 85.1
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 4.4e-83 312.0 166 89.8
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.2e-69 267.3 240 60.4
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 1.6e-69 266.9 233 57.5
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.2e-58 229.9 139 86.3
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 3.2e-57 226.1 147 81.6
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 7.1e-57 224.9 113 92.9
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.6e-56 223.8 146 80.8
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.6e-48 197.2 98 91.8
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 5.3e-44 182.2 275 46.2
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 5.8e-43 178.7 113 79.6
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 3.5e-40 169.5 200 52.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 3.0e-39 166.4 108 75.9
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.1e-38 164.5 135 63.0
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 9.6e-38 161.4 92 83.7
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.4e-36 157.5 199 48.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 4.2e-33 146.0 104 76.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 6.2e-29 132.1 85 78.8
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.5e-27 127.5 96 67.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.5e-25 120.2 115 62.6
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.2e-19 101.3 64 79.7
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 8.8e-15 85.1 85 56.5
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.2e-10 70.5 56 67.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.1e-09 68.2 63 55.6
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 9.4e-09 65.1 44 77.3
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 2.7e-08 63.5 52 67.3
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 3.6e-08 63.2 36 80.6
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 6.1e-08 62.4 62 59.7
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 2.6e-06 57.0 38 65.8
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 5.7e-06 55.8 34 73.5


User provided reference genes

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