Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18734 Vaccinium macrocarpon HOM05D005956 ORTHO05D007197 3.8e-277 958.0 655 100.0
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 3.7e-192 675.6 647 79.4
CSS0010876 Camellia sinensis var. sinensis HOM05D005956 ORTHO05D007197 8.4e-160 568.2 536 81.3
Actinidia21896 Actinidia chinensis HOM05D005956 ORTHO05D007197 2.7e-142 510.0 562 67.8
Thecc.06G054100 Theobroma cacao HOM05D005956 ORTHO05D007197 6.3e-131 472.2 610 57.5
Cfa003426 Carpinus fangiana HOM05D005956 ORTHO05D007197 8.2e-131 471.9 594 58.6
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 5.5e-127 459.1 524 61.8
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 5.5e-127 459.1 514 71.6
PSO170G2336 Papaver somniferum HOM05D005956 ORTHO05D007197 1.2e-126 458.0 524 68.9
Nitab4.5_0000499g0110 Nicotiana tabacum HOM05D005956 ORTHO05D007197 1.8e-125 454.1 515 62.9
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 2.3e-125 453.8 561 59.2
CiPaw.01G207000 Carya illinoinensis HOM05D005956 ORTHO05D007197 3.0e-125 453.4 517 63.2
MD17G1161200 Malus domestica HOM05D005956 ORTHO05D007197 8.8e-125 451.8 525 61.3
PSO063G0021 Papaver somniferum HOM05D005956 ORTHO05D007197 2.0e-124 450.7 524 69.8
QL07p046118 Quercus lobata HOM05D005956 ORTHO05D007197 1.7e-120 437.6 528 60.8
Sabra07G0001300 Salix brachista HOM05D005956 ORTHO05D007197 2.2e-120 437.2 582 55.5
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 5.0e-120 436.0 525 60.4
Lsat_1_v5_gn_4_106240 Lactuca sativa HOM05D005956 ORTHO05D007197 4.2e-119 433.0 520 69.8
TAR636G0827 Trochodendron aralioides HOM05D005956 ORTHO05D007197 4.2e-119 433.0 458 77.7
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 8.0e-118 428.7 516 61.8
Eucgr.J03191 Eucalyptus grandis HOM05D005956 ORTHO05D007197 3.0e-117 426.8 529 58.8
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 4.0e-117 426.4 601 53.7
Gorai.010G135000 Gossypium raimondii HOM05D005956 ORTHO05D007197 1.2e-116 424.9 525 59.2
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 1.2e-116 424.9 529 59.2
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 1.8e-114 417.5 524 61.3
TWI12G1352 Tripterygium wilfordii HOM05D005956 ORTHO05D007197 9.1e-114 415.2 524 58.6
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 1.6e-113 414.5 575 63.5
Oeu039938.1 Olea europaea HOM05D005956 ORTHO05D007197 3.5e-113 413.3 530 67.5
Haze_16217 Corylus avellana HOM05D005956 ORTHO05D007197 7.7e-113 412.1 746 47.2
Potri.007G001800 Populus trichocarpa HOM05D005956 ORTHO05D007197 1.0e-112 411.8 514 59.7
Aa31LG4G2050 Aethionema arabicum HOM05D005956 ORTHO05D007197 1.3e-112 411.4 524 60.7
Sopen03g041770 Solanum pennellii HOM05D005956 ORTHO05D007197 1.7e-112 411.0 528 59.1
BraA07t31918Z Brassica rapa HOM05D000309 ORTHO05D007197 1.9e-111 407.5 523 57.7
Hma1.2p1_1111F.1_g258470 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 4.2e-111 406.4 516 63.6
MELO3C020528.2 Cucumis melo HOM05D005956 ORTHO05D007197 2.7e-110 403.7 516 58.1
AUR62000122 Chenopodium quinoa HOM05D005956 ORTHO05D007197 1.0e-109 401.7 569 54.8
CANSAT01G3224 Cannabis sativa HOM05D005956 ORTHO05D007197 6.8e-109 399.1 527 55.0
Cpa.g.sc176.24 Carica papaya HOM05D005956 ORTHO05D007197 8.8e-109 398.7 583 54.5
Solyc03g124040.3 Solanum lycopersicum HOM05D005956 ORTHO05D007197 2.6e-108 397.1 528 58.0
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.4e-108 396.7 524 57.6
HanXRQChr15g0497231 Helianthus annuus HOM05D005956 ORTHO05D007197 5.7e-108 396.0 520 65.4
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.3e-107 394.8 525 60.2
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.7e-107 393.3 525 57.3
PGSC0003DMG400009194 Solanum tuberosum HOM05D005956 ORTHO05D007197 3.7e-107 393.3 524 58.4
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.9e-107 392.9 524 57.3
Migut.D02038 Erythranthe guttata HOM05D005956 ORTHO05D007197 1.8e-106 391.0 522 66.3
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 4.5e-105 386.3 521 65.3
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 7.7e-105 385.6 515 57.3
ATR0626G219 Amborella trichopoda HOM05D005956 ORTHO05D007197 1.7e-104 384.4 524 63.2
SGA_v2.0_scaffold115G32115 Striga asiatica HOM05D005956 ORTHO05D007197 1.7e-104 384.4 547 62.3
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 8.6e-104 382.1 519 55.1
EL10Ac7g17213 Beta vulgaris HOM05D005956 ORTHO05D007197 1.1e-103 381.7 608 56.9
Peaxi162Scf00038g02615 Petunia axillaris HOM05D005956 ORTHO05D007197 4.3e-103 379.8 527 56.9
SGA_v2.0_scaffold69G23343 Striga asiatica HOM05D005956 ORTHO05D007197 1.2e-102 378.3 529 56.3
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 2.1e-102 377.5 532 55.1
Lj7A719T46 Lonicera japonica HOM05D005956 ORTHO05D007197 4.7e-102 376.3 583 58.1
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 5.2e-101 372.9 548 50.9
C06p52830 Brassica napus HOM05D000309 ORTHO05D007197 6.8e-101 372.5 522 59.4
A07p44100 Brassica napus HOM05D000309 ORTHO05D007197 8.9e-101 372.1 522 60.0
COL.COLO4_25126 Corchorus olitorius HOM05D005956 ORTHO05D007197 1.2e-100 371.7 524 53.8
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 1.5e-100 371.3 516 51.4
SalBow8G3086 Salvia bowleyana HOM05D005956 ORTHO05D007197 4.4e-100 369.8 527 63.8
AUR62019303 Chenopodium quinoa HOM05D005956 ORTHO05D007197 1.3e-99 368.2 551 53.5
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 2.2e-99 367.5 516 51.6
CsaV3_1G036410 Cucumis sativus L. HOM05D005956 ORTHO05D007197 6.4e-99 365.9 515 56.7
THA.LOC104812335 Tarenaya hassleriana HOM05D005956 ORTHO05D007197 1.4e-98 364.8 521 62.6
Carub.0002s2578 Capsella rubella HOM05D005956 ORTHO05D007197 3.2e-98 363.6 526 51.3
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 7.0e-98 362.5 518 57.3
Hund05666 Selenicereus undatus HOM05D005956 ORTHO05D007197 1.6e-97 361.3 531 55.0
BcaC08g47440 Brassica carinata HOM05D005956 ORTHO05D007197 2.7e-97 360.5 522 62.3
Sc05g0006980 Simmondsia chinensis HOM05D005956 ORTHO05D007197 2.7e-97 360.5 382 62.6
BolC6t40300H Brassica oleracea HOM05D000163 ORTHO05D000219 5.9e-97 359.4 522 62.1
BcaB03g16055 Brassica carinata HOM05D005956 ORTHO05D007197 8.6e-96 355.5 521 58.7
Gohir.D06G117400 Gossypium hirsutum HOM05D005956 ORTHO05D007197 8.6e-96 355.5 384 50.8
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 4.4e-92 343.2 534 47.9
MBI16_g10330_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 1.3e-91 341.7 526 60.8
unitig_578.g15928 Utricularia gibba HOM05D005956 ORTHO05D007197 6.4e-91 339.3 518 51.7
Nn2g12784 Nelumbo nucifera HOM05D005956 ORTHO05D007197 1.9e-90 337.8 524 53.1
Prupe.3G025200 Prunus persica HOM05D005956 ORTHO05D007197 1.0e-88 332.0 347 52.4
Aqoxy7G02692 Aquilegia oxysepala HOM05D005956 ORTHO05D007197 1.5e-87 328.2 523 58.9
Zm00001eb000010 Zea mays HOM05D005956 ORTHO05D007197 8.1e-86 322.4 582 54.1
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 1.2e-84 318.5 519 49.1
AL2G39370 Arabidopsis lyrata HOM05D005956 ORTHO05D007197 1.5e-84 318.2 524 56.7
Dinv08767 Davidia involucrata HOM05D005956 ORTHO05D007197 2.0e-84 317.8 397 76.6
AT1G78930 Arabidopsis thaliana HOM05D005956 ORTHO05D007197 1.2e-81 308.5 522 54.8
Glyma.15G000800 Glycine max HOM05D005956 ORTHO05D007197 2.7e-81 307.4 530 46.6
Thhalv10018313m.g Eutrema salsugineum HOM05D005956 ORTHO05D007197 6.0e-81 306.2 521 55.3
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 1.1e-79 302.0 528 48.3
FvH4_4g20560 Fragaria vesca HOM05D005956 ORTHO05D007197 1.8e-77 294.7 357 48.7
Os09g0560100 Oryza sativa ssp. japonica HOM05D005956 ORTHO05D007197 5.2e-77 293.1 555 55.3
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 1.2e-76 292.0 531 45.4
Actinidia24382 Actinidia chinensis HOM05D005956 ORTHO05D007197 2.6e-76 290.8 490 54.7
CDE02G2643 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 3.4e-76 290.4 360 45.8
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 2.9e-75 287.3 616 41.2
HPP92_000245 Vanilla planifolia HOM05D005956 ORTHO05D007197 2.9e-75 287.3 526 36.9
Atru.chr1.2601 Acer truncatum HOM05D005956 ORTHO05D007197 4.9e-75 286.6 308 52.6
DCAR_030820 Daucus carota HOM05D005956 ORTHO05D007197 1.5e-71 275.0 527 49.7
Phvul.005G185600 Phaseolus vulgaris HOM05D005956 ORTHO05D007197 4.3e-71 273.5 390 40.0
Psat5g306040 Pisum sativum HOM05D005956 ORTHO05D007197 2.4e-69 267.7 522 44.3
Ca_00996_v3 Cicer arietinum L. HOM05D005956 ORTHO05D007197 3.4e-68 263.8 536 45.7
Zm00001eb320340 Zea mays HOM05D005956 ORTHO05D007197 9.3e-66 255.8 527 53.7
ECA233G3598 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-63 248.8 494 56.3
CARHR072540 Cardamine hirsuta HOM05D005956 ORTHO05D007197 2.5e-63 247.7 227 57.7
Hma1.2p1_1111F.1_g258480 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 2.0e-60 238.0 279 58.8
MBI16_g37212_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 4.0e-53 213.8 305 58.0
MBI16_g00686_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 4.9e-51 206.8 323 74.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 5.1e-48 196.8 269 43.9
AagrBONN_evm.TU.Sc2ySwM_368.2861 Anthoceros agrestis HOM05D005956 ORTHO05D007197 4.6e-41 173.7 520 44.4
Gohir.A06G112700 Gossypium hirsutum HOM05D005956 ORTHO05D007197 3.0e-40 171.0 215 75.3
Mapoly0216s0005 Marchantia polymorpha HOM05D005956 ORTHO05D007197 2.1e-38 164.9 529 47.1
SEGI_03409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 4.1e-37 160.6 225 40.0
SEGI_15409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 4.1e-37 160.6 225 40.0
MD09G1167300 Malus domestica HOM05D005956 ORTHO05D007197 1.2e-33 149.1 167 51.5
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 2.9e-27 127.9 525 30.5
SGA_v2.0_scaffold1097G53840 Striga asiatica HOM05D005956 ORTHO05D007197 1.0e-19 102.8 83 59.0
MD09G1167200 Malus domestica HOM05D005956 ORTHO05D007197 8.5e-19 99.8 102 51.0
Nitab4.5_0005679g0030 Nicotiana tabacum HOM05D005956 ORTHO05D007197 1.1e-18 99.4 76 67.1
Nitab4.5_0005679g0020 Nicotiana tabacum HOM05D005956 ORTHO05D007197 2.5e-18 98.2 58 75.9
CBR_g20999 Chara braunii HOM05D005956 ORTHO05D001299 5.5e-18 97.1 209 31.6
Glyma.06G230200 Glycine max HOM05D005956 ORTHO05D007197 9.4e-18 96.3 74 58.1
arahy.Tifrunner.gnm1.ann1.X8CU4B Arachis hypogaea HOM05D005956 ORTHO05D007197 1.2e-17 95.9 95 49.5
Psat0s410g0120 Pisum sativum HOM05D005956 ORTHO05D007197 2.7e-17 94.7 77 57.1
Sc05g0006990 Simmondsia chinensis HOM05D005956 ORTHO05D007197 2.7e-17 94.7 65 66.2
arahy.Tifrunner.gnm1.ann1.DBZ4H1 Arachis hypogaea HOM05D005956 ORTHO05D007197 4.7e-17 94.0 93 52.7
HPP92_000192 Vanilla planifolia HOM05D005956 ORTHO05D007197 1.0e-16 92.8 177 32.8
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 1.4e-16 92.4 67 62.7
Actinidia38816 Actinidia chinensis HOM05D005956 ORTHO05D007197 7.0e-13 80.1 50 76.0
arahy.Tifrunner.gnm1.ann1.85VD00 Arachis hypogaea HOM05D005956 ORTHO05D007197 1.7e-11 75.5 74 50.0
HanXRQChr04g0125301 Helianthus annuus HOM05D005956 ORTHO05D007197 2.2e-11 75.1 48 66.7
SGA_v2.0_scaffold69G23347 Striga asiatica HOM05D005956 ORTHO05D007197 1.5e-10 72.4 144 82.6
arahy.Tifrunner.gnm1.ann1.X81K0T Arachis hypogaea HOM05D005956 ORTHO05D007197 8.0e-09 66.6 57 52.6
SEGI_36231 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 1.8e-08 65.5 177 36.2
Glyma.19G019500 Glycine max HOM05D005956 ORTHO05D007197 5.2e-08 63.9 99 35.4
Pp3c5_9520 Physcomitrium patens HOM05D005605 ORTHO05D001299 8.8e-08 63.2 73 38.4
CDE02G0452 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 1.5e-07 62.4 79 44.3
Prupe.8G049300 Prunus persica HOM05D002901 ORTHO05D003183 2.6e-07 61.6 93 38.7
CSS0013111 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 5.7e-07 60.5 93 37.6
Ciclev10000930m.g Citrus clementina HOM05D002901 ORTHO05D003183 9.7e-07 59.7 93 34.4
Hma1.2p1_0276F.1_g111320 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 9.7e-07 59.7 52 48.1
MD07G1031000 Malus domestica HOM05D002901 ORTHO05D003183 9.7e-07 59.7 93 37.6
TAR376G0603 Trochodendron aralioides HOM05D002901 ORTHO05D003183 9.7e-07 59.7 52 51.9
arahy.Tifrunner.gnm1.ann1.ZI8HJG Arachis hypogaea HOM05D005956 ORTHO05D007197 1.7e-06 58.9 62 50.0
CANSAT01G2366 Cannabis sativa HOM05D005605 ORTHO05D007615 1.7e-06 58.9 54 50.0
CARHR094320 Cardamine hirsuta HOM05D001557 ORTHO05D001299 1.7e-06 58.9 235 23.4
Nn3g16735 Nelumbo nucifera HOM05D002901 ORTHO05D003183 1.7e-06 58.9 66 42.4
Phvul.002G321600 Phaseolus vulgaris HOM05D002901 ORTHO05D003183 2.2e-06 58.5 52 50.0
VMungo0251G0115 Vigna mungo HOM05D002901 ORTHO05D003183 2.2e-06 58.5 52 50.0
Actinidia15630 Actinidia chinensis HOM05D002901 ORTHO05D003183 2.8e-06 58.2 93 35.5
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 2.8e-06 58.2 52 48.1
arahy.Tifrunner.gnm1.ann1.IVXM4E Arachis hypogaea HOM05D002901 ORTHO05D003183 2.8e-06 58.2 52 48.1
CSS0006169 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 2.8e-06 58.2 93 36.6
Carub.0003s1871 Capsella rubella HOM05D001557 ORTHO05D001299 2.8e-06 58.2 199 23.6
Ca_17273_v3 Cicer arietinum L. HOM05D002901 ORTHO05D003183 2.8e-06 58.2 52 48.1
Aa31LG8G5710 Aethionema arabicum HOM05D001557 ORTHO05D001299 3.7e-06 57.8 217 21.7
AT3G18870 Arabidopsis thaliana HOM05D001557 ORTHO05D001299 3.7e-06 57.8 199 23.1
Cfa018219 Carpinus fangiana HOM05D002901 ORTHO05D003183 3.7e-06 57.8 91 37.4
Haze_17884 Corylus avellana HOM05D002901 ORTHO05D003183 3.7e-06 57.8 91 37.4
Medtr1g115415 Medicago truncatula HOM05D002901 ORTHO05D003183 3.7e-06 57.8 52 48.1
RcHm_v2.0_Chr3g0488701 Rosa chinensis HOM05D002901 ORTHO05D003183 4.8e-06 57.4 52 48.1
Sp3g16970 Schrenkiella parvula HOM05D001557 ORTHO05D001299 4.8e-06 57.4 227 23.3
SEGI_23691 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 4.8e-06 57.4 50 54.0
SEGI_40488 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 4.8e-06 57.4 50 54.0
TPR.G34335 Trifolium pratense HOM05D002901 ORTHO05D003183 4.8e-06 57.4 52 46.2
Zm00001eb299540 Zea mays HOM05D005605 ORTHO05D007615 4.8e-06 57.4 51 51.0
AL3G32260 Arabidopsis lyrata HOM05D001557 ORTHO05D001299 6.3e-06 57.0 199 23.1
AUR62011322 Chenopodium quinoa HOM05D005605 ORTHO05D007615 6.3e-06 57.0 54 50.0
Glyma.08G046300 Glycine max HOM05D002901 ORTHO05D003183 6.3e-06 57.0 52 48.1
Ah.01g006280 Amaranthus hybridus HOM05D005605 ORTHO05D007615 8.2e-06 56.6 54 48.1
BraA05t21910Z Brassica rapa HOM05D001557 ORTHO05D001299 8.2e-06 56.6 224 23.2
Cc02_g17560 Coffea canephora HOM05D005605 ORTHO05D007615 8.2e-06 56.6 54 48.1
Lj4g0013449 Lotus japonicus HOM05D002901 ORTHO05D003183 8.2e-06 56.6 50 50.0
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 8.2e-06 56.6 58 43.1
THA.LOC104824826 Tarenaya hassleriana HOM05D005605 ORTHO05D007615 8.2e-06 56.6 54 50.0
GSVIVG01031970001 Vitis vinifera HOM05D005605 ORTHO05D007615 8.2e-06 56.6 55 50.9


User provided reference genes

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