Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18730 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 0.0e+00 1147.1 621 100.0
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 5.1e-223 778.1 544 80.9
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 2.7e-176 622.9 542 66.1
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 7.5e-142 508.4 552 55.4
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 2.3e-135 486.9 543 54.0
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 5.8e-134 482.3 542 54.2
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 5.8e-134 482.3 557 53.3
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 5.4e-132 475.7 543 53.8
GSVIVG01036288001 Vitis vinifera HOM05D003637 ORTHO05D004175 7.1e-132 475.3 535 53.6
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.6e-131 474.2 541 52.3
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 1.7e-130 470.7 535 51.4
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 6.6e-130 468.8 542 52.2
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 8.6e-130 468.4 548 52.0
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 8.6e-130 468.4 546 52.4
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 1.5e-129 467.6 540 52.2
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 5.6e-129 465.7 540 51.3
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 2.8e-128 463.4 542 50.7
Haze_10275 Corylus avellana HOM05D003637 ORTHO05D004175 2.3e-127 460.3 525 52.8
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 3.1e-127 459.9 541 51.2
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 1.5e-126 457.6 535 51.8
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 4.4e-126 456.1 549 52.1
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 1.7e-125 454.1 543 51.6
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 1.4e-124 451.1 569 49.6
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 5.4e-124 449.1 537 50.7
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 1.6e-123 447.6 538 49.8
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 2.1e-123 447.2 546 51.8
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.0e-122 444.9 548 52.2
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 1.1e-121 441.4 545 51.2
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 1.1e-121 441.4 536 51.1
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 1.5e-121 441.0 542 51.3
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 1.9e-121 440.7 543 50.6
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 1.9e-121 440.7 548 51.6
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 2.5e-121 440.3 541 49.0
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.5e-121 440.3 539 51.8
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 3.3e-121 439.9 535 49.7
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 1.2e-120 438.0 535 49.7
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 6.2e-120 435.6 539 51.2
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 1.8e-119 434.1 541 49.7
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 2.4e-119 433.7 539 51.4
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 4.0e-119 433.0 540 48.7
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 4.0e-119 433.0 540 48.7
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 6.8e-119 432.2 539 51.2
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 8.9e-119 431.8 537 49.9
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 2.6e-118 430.3 539 49.4
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 4.4e-118 429.5 535 49.2
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 2.2e-117 427.2 535 48.8
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 3.8e-117 426.4 541 50.5
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 8.4e-117 425.2 552 48.7
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 3.5e-115 419.9 552 48.7
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 6.0e-115 419.1 536 48.1
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 7.8e-115 418.7 547 47.3
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 7.8e-115 418.7 543 47.5
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.0e-114 418.3 542 49.8
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 2.3e-114 417.2 543 50.8
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 3.9e-114 416.4 543 49.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.1e-113 414.8 549 50.6
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.5e-113 414.5 542 48.2
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 9.6e-113 411.8 544 48.0
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 1.6e-112 411.0 546 48.5
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 2.8e-112 410.2 548 47.6
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 8.1e-112 408.7 547 49.4
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 1.1e-111 408.3 547 47.9
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.4e-111 407.9 532 48.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.1e-111 406.8 544 47.4
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 3.1e-111 406.8 546 47.8
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 2.6e-110 403.7 536 48.7
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 4.4e-110 402.9 554 46.2
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 7.6e-110 402.1 536 45.9
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 1.3e-109 401.4 541 48.1
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 1.3e-109 401.4 538 46.8
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 1.7e-109 401.0 555 50.5
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 2.2e-109 400.6 537 47.3
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 2.9e-109 400.2 550 46.9
Lj8A738T8 Lonicera japonica HOM05D003637 ORTHO05D004175 2.9e-109 400.2 546 49.5
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 3.8e-109 399.8 536 50.4
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.1e-108 398.3 536 49.6
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 5.4e-108 396.0 541 47.5
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 5.4e-108 396.0 541 48.1
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 5.4e-108 396.0 564 46.3
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 9.3e-108 395.2 547 47.3
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.0e-106 391.7 586 44.0
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 6.6e-106 389.0 541 47.0
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 8.7e-106 388.7 531 47.6
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 1.9e-105 387.5 545 47.3
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 2.5e-105 387.1 558 45.9
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 5.6e-105 386.0 537 44.9
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 9.6e-105 385.2 531 46.1
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 1.3e-104 384.8 545 45.7
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 2.4e-103 380.6 541 46.4
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 5.3e-103 379.4 542 46.7
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 8.4e-101 372.1 547 45.3
SHI17420 Sapria himalayana HOM05D003637 ORTHO05D004175 8.4e-101 372.1 540 43.9
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 2.4e-100 370.5 536 43.5
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 3.2e-100 370.2 542 45.8
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 4.2e-100 369.8 542 45.6
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 2.1e-99 367.5 536 43.3
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 2.7e-99 367.1 551 45.0
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 2.8e-96 357.1 553 44.7
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 3.1e-95 353.6 540 43.5
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 5.3e-95 352.8 551 44.5
Oeu017573.1 Olea europaea HOM05D003637 ORTHO05D004175 9.0e-95 352.1 489 47.6
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 1.7e-93 347.8 546 43.4
CDE10G0800 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 3.5e-91 340.1 550 42.5
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 1.8e-90 337.8 554 41.5
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 8.7e-90 335.5 542 43.5
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 4.8e-88 329.7 396 49.0
Oeu019452.1 Olea europaea HOM05D003637 ORTHO05D004175 1.8e-87 327.8 478 46.2
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 3.4e-86 323.6 397 46.9
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 1.0e-82 312.0 567 38.6
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 8.7e-82 308.9 558 41.8
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 6.3e-80 302.8 546 40.1
Lsat_1_v5_gn_1_27560 Lactuca sativa HOM05D003637 ORTHO05D004175 2.0e-78 297.7 393 47.1
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.7e-77 294.7 545 40.0
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 2.2e-77 294.3 545 39.1
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 5.5e-76 289.7 396 46.7
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 2.7e-75 287.3 541 37.7
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 4.6e-75 286.6 393 47.1
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 1.0e-74 285.4 481 41.2
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 3.0e-74 283.9 542 40.8
Aa31LG11G13210 Aethionema arabicum HOM05D003637 ORTHO05D004175 1.1e-73 282.0 482 42.9
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 2.0e-73 281.2 394 46.2
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 2.5e-73 280.8 394 45.4
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 1.7e-72 278.1 394 45.9
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 2.8e-72 277.3 394 45.4
SEGI_15544 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 4.2e-68 263.5 579 34.9
Lsat_1_v5_gn_7_60281 Lactuca sativa HOM05D003637 ORTHO05D004175 3.6e-67 260.4 339 46.0
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 2.5e-52 211.1 391 39.1
SEGI_40078 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 1.6e-51 208.4 397 38.5
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 6.1e-51 206.5 633 30.0
BNapus_Darmor_BZH_scaffold_99p00040 Brassica napus HOM05D003637 ORTHO05D004175 1.8e-50 204.9 280 48.6
FAN14G4419 Fragaria x ananassa HOM05D003637 ORTHO05D004175 3.4e-49 200.7 343 43.1
Lsat_1_v5_gn_3_57620 Lactuca sativa HOM05D003637 ORTHO05D004175 5.5e-44 183.3 362 36.2
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 4.7e-43 180.3 486 33.5
HPP92_000900 Vanilla planifolia HOM05D003637 ORTHO05D004175 2.0e-41 174.9 420 34.5
HPP92_000901 Vanilla planifolia HOM05D003637 ORTHO05D004175 1.3e-37 162.2 109 72.5
CBR_g19630 Chara braunii HOM05D003637 ORTHO05D004175 4.6e-30 137.1 677 26.6
TAR374G0972 Trochodendron aralioides HOM05D003637 ORTHO05D004175 1.0e-29 136.0 224 41.5
Cre02.g142352 Chlamydomonas reinhardtii HOM05D003637 ORTHO05D004175 3.3e-28 131.0 163 48.5
HanXRQChr01g0009581 Helianthus annuus HOM05D003637 ORTHO05D004175 2.6e-25 121.3 311 36.0
TPR.G29194 Trifolium pratense HOM05D003637 ORTHO05D004175 3.5e-22 110.9 63 82.5
BraSC328t45965Z Brassica rapa HOM05D003637 ORTHO05D004175 4.3e-20 104.0 82 64.6
Nitab4.5_0002446g0080 Nicotiana tabacum HOM05D003637 ORTHO05D004175 5.2e-18 97.1 165 41.2
Medtr4g129940 Medicago truncatula HOM05D003637 ORTHO05D004175 8.9e-18 96.3 61 70.5
Cfa022007 Carpinus fangiana HOM05D003637 ORTHO05D004175 2.0e-17 95.1 64 67.2
BNapus_Darmor_BZH_scaffold_99p00050 Brassica napus HOM05D003637 ORTHO05D004175 2.2e-16 91.7 51 86.3
Nitab4.5_0002446g0110 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.1e-15 89.4 110 49.1
TAR374G0451 Trochodendron aralioides HOM05D003637 ORTHO05D004175 1.9e-15 88.6 111 52.3
QL06p049632 Quercus lobata HOM05D003637 ORTHO05D004175 3.5e-14 84.3 83 55.4
TPR.G5462 Trifolium pratense HOM05D011581 ORTHO05D004175 1.3e-13 82.4 123 43.1
Medtr7g012030 Medicago truncatula HOM05D000208 ORTHO05D004175 2.5e-12 78.2 51 66.7
BcaC06g34238 Brassica carinata HOM05D001392 ORTHO05D032327 1.2e-11 75.9 103 42.7
Dinv25781 Davidia involucrata HOM05D003637 ORTHO05D004175 8.9e-10 69.7 85 54.1
Medtr6g046330 Medicago truncatula HOM05D000208 ORTHO05D012967 5.8e-09 67.0 41 70.7
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.3e-08 65.9 38 81.6
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 8.4e-08 63.2 82 43.9
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 8.4e-08 63.2 82 43.9
C03p76060 Brassica napus HOM05D000516 ORTHO05D000409 1.9e-07 62.0 85 42.4
BolC9t58620H Brassica oleracea HOM05D003550 ORTHO05D004336 3.2e-07 61.2 95 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4290 Anthoceros agrestis HOM05D003637 ORTHO05D004175 9.2e-07 59.7 412 24.5
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 3.5e-06 57.8 63 50.8
Medtr6g038890 Medicago truncatula HOM05D000304 ORTHO05D004175 7.8e-06 56.6 52 53.8


User provided reference genes

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