Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 9.3e-192 673.3 326 100.0
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 4.4e-109 398.7 320 65.6
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.4e-107 392.9 326 63.8
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 3.5e-98 362.5 324 58.0
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 7.5e-93 344.7 324 55.2
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.2e-91 339.3 325 53.2
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 2.1e-90 336.7 326 53.7
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.0e-90 335.1 326 54.3
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.7e-89 333.6 326 54.3
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.5e-88 330.5 363 50.4
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.3e-88 328.9 326 54.0
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.2e-87 327.4 325 53.5
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 6.2e-87 325.1 324 51.5
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.4e-86 323.9 326 53.7
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.4e-86 323.9 326 53.7
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 5.2e-86 322.0 325 51.4
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 5.2e-86 322.0 326 52.5
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 5.2e-86 322.0 326 52.5
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.2e-85 320.9 325 52.6
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 2.6e-85 319.7 324 50.6
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 5.8e-85 318.5 325 52.3
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 7.6e-85 318.2 324 53.1
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 9.9e-85 317.8 326 51.8
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 8.4e-84 314.7 326 52.5
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-83 313.9 329 52.9
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.4e-83 313.9 251 68.5
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.9e-83 313.5 326 51.5
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 3.2e-83 312.8 327 51.7
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.2e-82 310.8 326 51.2
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 2.1e-82 310.1 326 49.4
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 5.1e-81 305.4 326 48.8
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.1e-81 305.4 326 50.6
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.5e-80 303.9 305 52.8
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.9e-80 303.5 326 50.3
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.9e-80 303.5 308 53.9
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 3.3e-80 302.8 326 50.0
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.3e-80 302.8 326 50.0
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 3.3e-80 302.8 325 49.2
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 7.3e-80 301.6 358 48.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.2e-79 300.8 326 49.7
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.2e-79 300.8 325 48.9
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 1.6e-79 300.4 325 47.4
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 6.2e-79 298.5 326 49.4
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 6.2e-79 298.5 326 47.5
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 6.2e-79 298.5 326 48.5
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.4e-78 297.4 326 48.8
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.8e-78 297.0 321 49.2
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-78 297.0 318 50.0
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.8e-78 297.0 336 47.3
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.8e-78 297.0 327 48.9
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.8e-78 297.0 325 48.3
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 3.1e-78 296.2 337 48.1
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 4.0e-78 295.8 326 50.6
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.0e-78 295.8 325 49.8
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 6.9e-78 295.0 305 50.8
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.9e-78 295.0 315 50.2
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.2e-77 294.3 325 48.9
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.5e-77 293.9 326 48.2
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 5.8e-77 292.0 277 53.4
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.6e-77 291.6 326 47.9
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.9e-77 291.2 338 48.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.3e-76 290.8 326 47.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.3e-76 290.8 327 49.2
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 2.9e-76 289.7 326 47.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 4.9e-76 288.9 325 48.0
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.1e-75 287.7 328 47.9
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.9e-75 287.0 274 52.2
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 5.4e-75 285.4 323 47.1
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 7.1e-75 285.0 325 47.7
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 3.5e-74 282.7 325 46.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 4.6e-74 282.3 325 47.1
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 4.6e-74 282.3 225 59.6
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 6.0e-74 282.0 325 46.8
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.3e-73 280.8 276 52.9
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 2.3e-73 280.0 325 46.5
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.9e-73 279.3 288 50.7
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.1e-73 278.9 286 50.7
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 6.6e-73 278.5 327 48.9
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.1e-72 277.7 302 49.0
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.3e-72 276.2 325 46.5
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.3e-71 274.2 324 44.4
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.1e-71 273.5 326 46.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-70 271.2 304 47.7
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.4e-70 270.8 304 47.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.8e-70 270.4 300 50.3
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 2.4e-70 270.0 367 42.5
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 6.9e-70 268.5 335 46.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 2.6e-69 266.5 271 50.6
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 2.9e-68 263.1 325 44.0
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.9e-68 263.1 314 45.2
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-66 257.3 224 59.4
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 5.1e-65 252.3 307 46.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 5.1e-65 252.3 281 47.0
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 5.1e-65 252.3 206 61.7
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-64 250.4 325 42.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.3e-64 249.6 206 58.7
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.6e-64 248.1 269 49.4
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 9.6e-64 248.1 322 42.5
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 8.1e-63 245.0 324 40.7
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 9.0e-62 241.5 286 45.8
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.5e-61 240.7 361 39.1
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 4.9e-60 235.7 323 44.0
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.3e-57 226.9 280 43.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.9e-56 223.8 277 44.4
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 3.1e-54 216.5 253 47.4
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 3.1e-54 216.5 281 44.1
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 3.2e-51 206.5 333 41.1
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.1e-50 203.8 208 51.9
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.6e-47 194.1 236 40.7
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 8.2e-47 191.8 279 39.8
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.8e-44 183.0 176 51.7
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 2.1e-42 177.2 337 33.8
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 3.6e-42 176.4 276 38.4
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 6.1e-42 175.6 188 48.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.1e-40 171.4 238 42.4
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 3.3e-40 169.9 243 41.2
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.7e-40 169.1 188 50.5
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-39 167.9 173 52.0
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.4e-38 164.5 226 39.8
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.2e-37 161.4 165 48.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.2e-37 161.4 262 35.9
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 4.5e-37 159.5 257 36.6
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 5.9e-37 159.1 233 40.3
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.1e-35 154.8 248 37.9
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.9e-35 154.1 278 35.6
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.4e-33 147.9 167 43.7
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.3e-33 147.1 168 47.0
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 2.6e-32 143.7 110 60.0
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.7e-31 139.8 110 66.4
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.4e-30 137.9 149 51.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.4e-30 137.1 110 65.5
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.1e-30 136.7 110 65.5
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.1e-30 135.2 110 63.6
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.2e-27 125.6 255 34.9
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.7e-26 123.6 174 44.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 3.0e-25 120.2 272 31.2
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.0e-25 120.2 106 51.9
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 6.7e-25 119.0 96 59.4
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 2.0e-21 107.5 76 60.5
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 5.9e-21 105.9 68 72.1
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.2e-20 104.0 72 65.3
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 5.0e-20 102.8 314 26.1
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.9e-19 100.9 293 25.9
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 3.6e-18 96.7 276 26.1
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 8.0e-18 95.5 74 56.8
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.0e-17 93.6 305 26.9
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.3e-16 90.1 91 49.5
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.5e-16 89.0 91 49.5
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.2e-15 87.4 91 48.4
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 1.1e-14 85.1 63 58.7
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.1e-14 85.1 155 38.1
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-13 79.0 85 48.2
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-12 78.2 122 41.0
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.7e-12 77.8 124 38.7
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.2e-11 73.2 78 50.0
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.7e-07 61.2 67 47.8
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 9.1e-06 55.5 79 36.7


User provided reference genes

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