Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.8e-98 362.8 225 100.0
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 6.9e-45 184.9 113 87.6
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 7.9e-41 171.4 133 76.7
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.0e-35 154.5 123 72.4
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 8.4e-35 151.4 109 77.1
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 8.4e-35 151.4 119 71.4
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.1e-34 151.0 112 75.9
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 9.3e-34 147.9 124 69.4
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.2e-33 147.5 124 71.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.8e-32 143.7 97 75.3
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 3.9e-32 142.5 124 68.5
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.5e-31 139.8 95 77.9
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.3e-30 137.5 94 75.5
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.6e-30 137.1 110 70.0
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.6e-30 137.1 112 69.6
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 4.8e-30 135.6 132 64.4
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 6.3e-30 135.2 98 72.4
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 8.2e-30 134.8 93 76.3
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 8.2e-30 134.8 93 76.3
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 8.2e-30 134.8 123 65.0
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.1e-29 134.4 113 68.1
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.8e-29 133.7 135 65.2
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.8e-29 133.7 98 72.4
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.8e-29 133.7 124 64.5
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.4e-29 133.3 100 73.0
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.4e-29 133.3 100 73.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.1e-29 132.9 121 65.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 3.1e-29 132.9 116 66.4
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 3.1e-29 132.9 116 66.4
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 3.1e-29 132.9 123 63.4
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 4.1e-29 132.5 95 71.6
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.1e-29 132.5 115 64.3
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.1e-29 132.5 129 62.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 6.9e-29 131.7 124 66.1
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 6.9e-29 131.7 126 61.1
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 6.9e-29 131.7 95 71.6
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 9.0e-29 131.3 96 72.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 9.0e-29 131.3 94 73.4
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 9.0e-29 131.3 94 73.4
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 9.0e-29 131.3 120 65.0
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.2e-28 131.0 138 59.4
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.2e-28 131.0 138 59.4
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.5e-28 130.6 128 60.9
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.0e-28 130.2 95 71.6
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.6e-28 129.8 127 61.4
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.6e-28 129.8 127 61.4
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.6e-28 129.8 124 64.5
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.4e-28 129.4 112 66.1
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.4e-28 129.4 127 61.4
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 3.4e-28 129.4 113 66.4
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 3.4e-28 129.4 110 65.5
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 5.9e-28 128.6 144 59.0
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.9e-28 128.6 126 65.1
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.7e-28 128.3 125 65.6
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.0e-27 127.9 193 45.6
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.0e-27 127.9 94 71.3
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.3e-27 127.5 107 66.4
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.3e-27 127.5 128 63.3
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.3e-27 127.5 94 71.3
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-27 127.1 125 64.8
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.7e-27 127.1 193 49.2
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.2e-27 126.7 105 63.8
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.9e-27 126.3 97 71.1
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.9e-27 126.3 123 62.6
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.9e-27 126.3 142 59.2
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.9e-27 126.3 95 69.5
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.8e-27 125.9 118 61.9
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 3.8e-27 125.9 111 64.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 3.8e-27 125.9 123 62.6
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.8e-27 125.9 130 60.8
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.8e-27 125.9 95 69.5
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 3.8e-27 125.9 95 68.4
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 5.0e-27 125.6 120 57.5
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 5.0e-27 125.6 106 64.2
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 6.5e-27 125.2 136 59.6
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 6.5e-27 125.2 136 59.6
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 8.5e-27 124.8 95 65.3
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 8.5e-27 124.8 93 68.8
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.1e-26 124.4 121 60.3
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-26 124.4 109 63.3
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.1e-26 124.4 141 56.0
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-26 124.0 111 63.1
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.4e-26 124.0 111 63.1
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.4e-26 124.0 141 55.3
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.4e-26 124.0 114 61.4
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.5e-26 123.2 123 61.0
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-26 123.2 136 58.1
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.5e-26 123.2 141 55.3
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.2e-26 122.9 96 63.5
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 4.2e-26 122.5 109 62.4
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-25 120.9 138 57.2
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.2e-25 120.9 141 56.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.6e-25 120.6 141 56.0
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.6e-25 120.6 146 55.5
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-25 120.6 139 56.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.1e-25 120.2 99 65.7
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.1e-25 120.2 99 65.7
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.7e-25 119.8 133 58.6
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.7e-25 119.8 123 58.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 3.6e-25 119.4 99 61.6
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.6e-25 119.4 141 56.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 4.6e-25 119.0 94 64.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 6.1e-25 118.6 131 57.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 6.1e-25 118.6 93 69.9
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 7.9e-25 118.2 141 55.3
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 7.9e-25 118.2 138 53.6
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.4e-24 117.5 93 69.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.0e-24 116.3 133 57.1
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 6.7e-24 115.2 143 52.4
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.1e-23 114.4 104 62.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 3.3e-23 112.8 136 52.9
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.3e-22 110.9 76 72.4
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 2.2e-22 110.2 121 53.7
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 4.8e-22 109.0 121 52.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.8e-21 107.1 62 83.9
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.4e-21 106.7 121 56.2
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 9.1e-21 104.8 61 83.6
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.2e-20 104.4 67 80.6
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.0e-20 103.6 94 56.4
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-19 100.9 64 85.9
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 8.5e-19 98.2 103 54.4
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 8.5e-19 98.2 129 48.8
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-18 97.8 95 60.0
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 3.2e-18 96.3 85 60.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.1e-17 93.6 90 57.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.7e-17 93.2 66 71.2
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 2.7e-17 93.2 66 71.2
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 7.9e-17 91.7 67 68.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 7.9e-17 91.7 67 68.7
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.1e-15 87.8 91 53.8
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 1.7e-14 84.0 93 48.4
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.7e-14 82.8 60 63.3
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 4.8e-14 82.4 61 62.3
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.1e-13 81.3 60 63.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.4e-13 80.9 134 41.8
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.8e-13 80.5 69 56.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.4e-13 80.1 59 64.4
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 4.1e-13 79.3 137 41.6
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.6e-12 77.4 59 64.4
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.5e-12 76.3 58 60.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.0e-11 74.7 66 54.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.9e-11 73.2 66 54.5
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 5.5e-10 68.9 127 38.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.2e-09 67.8 58 60.3
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.0e-07 60.5 66 45.5
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 2.6e-07 60.1 94 45.7
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 3.3e-07 59.7 64 48.4
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.7e-07 58.9 43 67.4


User provided reference genes

Program Settings