Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.9e-165 585.9 315 100.0
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 2.0e-122 443.0 307 81.4
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.9e-93 346.7 326 65.3
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.5e-85 319.7 327 61.8
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.2e-84 317.4 326 59.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 8.4e-73 278.1 324 54.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.5e-69 267.3 287 58.9
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 2.2e-65 253.4 307 55.4
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.9e-65 253.1 292 58.2
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 6.4e-65 251.9 298 55.0
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.2e-64 249.6 303 55.4
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.1e-63 246.9 304 54.6
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.3e-62 244.2 303 53.1
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.8e-62 243.8 303 53.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.8e-62 243.8 282 55.0
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 3.3e-61 239.6 328 51.2
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 5.6e-61 238.8 309 52.8
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 7.4e-61 238.4 302 51.0
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 8.1e-60 235.0 326 50.6
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.1e-59 234.6 324 50.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.4e-59 234.2 295 53.6
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.4e-59 234.2 296 52.0
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 2.4e-59 233.4 327 48.9
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.4e-59 233.4 309 52.8
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 9.0e-59 231.5 322 48.8
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 5.8e-58 228.8 321 49.8
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 7.6e-58 228.4 327 49.2
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 9.9e-58 228.0 282 57.4
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 3.8e-57 226.1 236 55.9
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.8e-57 226.1 292 51.4
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.4e-56 223.4 320 48.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.2e-56 223.0 317 48.6
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 4.2e-56 222.6 324 48.5
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 9.3e-56 221.5 296 51.7
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 9.3e-56 221.5 301 49.5
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.2e-55 221.1 321 48.0
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.1e-55 220.3 323 46.4
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.6e-55 219.2 286 52.8
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 6.0e-55 218.8 324 48.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.0e-54 218.0 307 50.5
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.0e-54 218.0 313 49.5
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.3e-54 216.9 218 58.7
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 3.0e-54 216.5 323 45.2
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 5.1e-54 215.7 296 50.7
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 6.7e-54 215.3 329 47.7
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.1e-53 214.5 280 52.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.5e-53 214.2 308 47.1
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.9e-53 213.8 313 48.9
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.9e-53 213.8 308 47.1
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 4.3e-53 212.6 285 55.4
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.1e-52 210.3 206 60.7
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.1e-52 210.3 309 48.2
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.8e-52 209.9 289 52.6
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.8e-52 209.1 259 57.5
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 8.2e-52 208.4 289 52.2
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.8e-51 207.2 243 53.9
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 2.4e-51 206.8 289 51.9
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.9e-51 205.3 280 51.8
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 6.9e-51 205.3 306 47.7
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.2e-50 204.5 219 56.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.5e-50 204.1 385 42.6
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 2.6e-50 203.4 277 52.7
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 3.4e-50 203.0 299 48.8
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 4.5e-50 202.6 229 56.8
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.0e-49 201.4 335 45.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.0e-49 201.4 239 53.1
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 2.2e-49 200.3 305 47.5
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 2.2e-49 200.3 243 52.7
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.2e-49 200.3 258 52.7
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.9e-49 199.9 238 53.8
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.9e-49 199.9 235 54.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.8e-49 199.5 298 51.0
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 4.9e-49 199.1 207 57.5
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 6.5e-49 198.7 195 60.0
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 6.5e-49 198.7 237 51.5
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.1e-48 198.0 222 54.5
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.9e-48 197.2 291 49.5
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 2.5e-48 196.8 231 54.1
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.5e-48 196.8 213 57.3
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 3.2e-48 196.4 325 46.2
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 3.2e-48 196.4 175 68.0
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 4.2e-48 196.1 203 57.1
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.2e-47 194.5 228 54.4
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 6.0e-47 192.2 199 55.8
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 6.0e-47 192.2 199 55.8
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.0e-46 191.4 314 43.3
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.3e-46 190.3 299 47.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 3.0e-46 189.9 216 56.5
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 3.0e-46 189.9 294 45.6
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 3.0e-46 189.9 184 60.9
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 5.1e-46 189.1 213 53.1
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 5.1e-46 189.1 213 53.1
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 5.1e-46 189.1 165 66.1
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 6.7e-46 188.7 294 45.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 8.7e-46 188.3 294 45.6
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 8.7e-46 188.3 269 48.7
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.5e-45 187.6 217 53.5
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 3.3e-45 186.4 299 46.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.4e-45 185.3 192 59.4
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 3.7e-44 183.0 152 67.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 3.7e-44 183.0 310 44.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 4.8e-44 182.6 280 45.0
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.4e-43 181.0 216 52.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 4.1e-43 179.5 301 44.9
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 9.0e-43 178.3 300 44.3
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.7e-41 174.1 308 41.2
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 2.2e-41 173.7 213 51.2
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 5.0e-41 172.6 147 68.7
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 4.2e-40 169.5 197 51.8
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 7.2e-40 168.7 239 48.5
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 9.4e-40 168.3 252 47.2
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.7e-39 166.8 267 45.7
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.6e-39 166.4 365 38.6
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 3.9e-38 162.9 240 47.9
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 6.7e-38 162.2 275 45.1
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 3.3e-37 159.8 177 54.2
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.3e-37 159.8 279 42.7
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 5.7e-37 159.1 154 63.6
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 5.7e-37 159.1 132 68.9
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 1.7e-36 157.5 142 66.9
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.8e-35 154.1 153 60.1
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 5.3e-35 152.5 205 49.3
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 6.9e-35 152.1 160 58.1
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 4.5e-34 149.4 109 73.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.5e-34 149.4 225 49.3
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 6.5e-33 145.6 183 49.7
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.3e-29 133.3 152 56.6
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 3.3e-29 133.3 109 72.5
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 5.9e-26 122.5 88 75.0
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.3e-25 121.3 172 48.8
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-24 118.2 163 47.2
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 7.2e-24 115.5 150 55.3
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.2e-20 104.0 90 66.7
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.7e-20 103.2 103 55.3
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 4.5e-18 96.3 98 60.2
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 5.0e-17 92.8 143 48.3
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.9e-16 90.9 128 45.3
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.7e-15 87.0 117 46.2
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.3e-14 84.0 230 32.6
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.0e-14 83.2 73 65.8
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 6.7e-14 82.4 173 38.2
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.5e-13 81.3 113 47.8
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 5.7e-13 79.3 226 36.3
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.8e-12 77.0 59 72.9
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.3e-12 75.9 116 50.9
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.7e-10 70.5 147 36.1
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 7.7e-10 68.9 88 54.5
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.1e-08 65.1 50 74.0
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 9.4e-08 62.0 44 77.3


User provided reference genes

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