Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.9e-63 244.6 120 100.0
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 7.7e-51 203.8 121 82.6
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.3e-47 192.2 121 76.0
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 8.8e-47 190.3 111 79.3
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.1e-46 189.9 111 78.4
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.5e-46 189.5 111 79.3
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.0e-46 189.1 111 79.3
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.5e-46 188.7 111 79.3
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 2.5e-46 188.7 111 79.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.3e-46 188.0 111 78.4
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 4.3e-46 188.0 111 79.3
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 5.7e-46 187.6 111 78.4
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 5.7e-46 187.6 111 78.4
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 7.4e-46 187.2 111 78.4
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 9.7e-46 186.8 111 76.6
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.7e-45 186.0 111 78.4
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.7e-45 186.0 111 76.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 3.7e-45 184.9 111 76.6
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 3.7e-45 184.9 111 76.6
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 4.8e-45 184.5 121 71.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 4.8e-45 184.5 112 75.0
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 8.2e-45 183.7 111 75.7
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.1e-44 183.3 121 73.6
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 1.4e-44 183.0 111 76.6
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.4e-44 183.0 121 74.4
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.8e-44 182.6 111 75.7
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.8e-44 182.6 121 71.9
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.8e-44 182.6 120 70.8
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 2.4e-44 182.2 121 71.1
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 2.4e-44 182.2 122 74.6
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 2.4e-44 182.2 121 71.9
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 3.1e-44 181.8 111 77.5
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 4.1e-44 181.4 111 75.7
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 4.1e-44 181.4 121 71.9
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 5.3e-44 181.0 111 76.6
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 5.3e-44 181.0 111 73.0
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 6.9e-44 180.6 111 76.6
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.2e-43 179.9 111 76.6
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.0e-43 179.1 121 70.2
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.0e-43 179.1 111 73.9
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 2.6e-43 178.7 111 75.7
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.4e-43 178.3 119 68.9
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 3.4e-43 178.3 111 73.9
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 4.5e-43 177.9 111 72.1
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 4.5e-43 177.9 111 73.9
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 4.5e-43 177.9 109 78.9
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 5.9e-43 177.6 111 75.7
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 7.7e-43 177.2 111 73.9
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 7.7e-43 177.2 111 72.1
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.0e-42 176.8 111 74.8
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.0e-42 176.8 111 74.8
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.3e-42 176.4 111 73.9
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.2e-42 175.6 111 74.8
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.9e-42 175.3 110 74.5
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.9e-42 175.3 143 62.2
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 3.8e-42 174.9 113 72.6
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 5.0e-42 174.5 111 71.2
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 6.5e-42 174.1 110 73.6
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 6.5e-42 174.1 121 71.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 6.5e-42 174.1 111 71.2
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 8.5e-42 173.7 111 73.0
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.1e-41 173.3 120 68.3
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.1e-41 173.3 111 71.2
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.9e-41 172.6 111 71.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 2.5e-41 172.2 111 70.3
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.2e-41 171.8 111 72.1
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 4.2e-41 171.4 111 73.0
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 5.5e-41 171.0 111 70.3
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 7.2e-41 170.6 111 69.4
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 7.2e-41 170.6 111 71.2
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 7.2e-41 170.6 111 69.4
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.2e-41 170.6 111 67.6
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.2e-41 170.6 111 67.6
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 9.4e-41 170.2 121 65.3
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 9.4e-41 170.2 111 71.2
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 9.4e-41 170.2 111 71.2
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.2e-40 169.9 111 68.5
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-40 169.9 111 69.4
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.2e-40 169.9 111 69.4
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-40 169.9 111 69.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.2e-40 169.9 111 70.3
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 1.2e-40 169.9 121 68.6
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.1e-40 169.1 111 69.4
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.1e-40 169.1 111 69.4
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.1e-40 169.1 111 69.4
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 2.7e-40 168.7 111 70.3
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.7e-40 168.7 121 66.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.6e-40 168.3 119 63.0
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 7.9e-40 167.2 111 69.4
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.8e-39 166.0 111 70.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-39 166.0 111 71.2
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.3e-39 165.6 111 70.3
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-39 165.6 111 70.3
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 2.3e-39 165.6 111 70.3
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 3.0e-39 165.2 111 70.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 3.0e-39 165.2 111 70.3
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 3.0e-39 165.2 121 66.1
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 3.9e-39 164.9 108 70.4
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 3.9e-39 164.9 108 70.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 8.8e-39 163.7 111 69.4
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.1e-38 163.3 111 68.5
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.6e-38 162.2 111 70.3
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 3.3e-38 161.8 108 70.4
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.4e-38 161.4 111 68.5
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.4e-38 161.4 109 69.7
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.4e-38 161.4 111 65.8
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 5.7e-38 161.0 111 66.7
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.7e-38 161.0 111 65.8
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 5.7e-38 161.0 111 65.8
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 7.4e-38 160.6 136 58.1
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 7.4e-38 160.6 111 64.9
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 7.4e-38 160.6 111 67.6
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 9.7e-38 160.2 130 60.0
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.3e-37 159.8 116 67.2
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.3e-37 159.8 114 64.9
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.3e-37 159.8 111 64.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.7e-37 159.5 111 65.8
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.2e-37 159.1 111 60.4
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 6.3e-37 157.5 120 61.7
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 8.2e-37 157.1 111 65.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.1e-36 156.8 111 67.6
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-36 156.8 111 66.7
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.4e-36 155.6 139 56.1
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.1e-36 155.2 127 61.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 4.1e-36 154.8 111 61.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 9.1e-36 153.7 111 65.8
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.5e-35 152.9 111 64.9
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 7.7e-35 150.6 107 67.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 3.8e-34 148.3 111 58.6
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.6e-32 142.9 111 59.5
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 6.1e-32 141.0 118 57.6
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.0e-32 140.6 119 55.5
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.0e-32 140.6 119 55.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 6.3e-29 131.0 89 65.2
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.0e-27 125.9 75 76.0
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.5e-27 125.2 119 49.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 3.8e-26 121.7 110 53.6
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.1e-25 120.2 111 55.9
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 5.5e-25 117.9 108 49.1
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 5.5e-25 117.9 100 59.0
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 5.5e-25 117.9 100 58.0
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.1e-24 114.4 119 45.4
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-23 113.2 76 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.7e-23 110.9 117 49.6
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 8.8e-23 110.5 107 51.4
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 2.8e-21 105.5 83 59.0
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 8.5e-18 94.0 108 43.5
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.9e-17 92.8 115 45.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 9.4e-17 90.5 108 40.7
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.4e-15 86.7 111 37.8
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.4e-15 86.7 107 41.1
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.2e-14 83.6 54 70.4
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-14 83.2 107 38.3
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 9.8e-14 80.5 60 63.3
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 1.3e-13 80.1 61 60.7
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 3.7e-13 78.6 109 42.2
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.3e-13 77.8 93 47.3
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-12 75.1 45 77.8
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-12 75.1 45 77.8
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-12 75.1 45 77.8
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.2e-11 73.6 45 75.6
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.0e-10 70.5 94 40.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 3.6e-08 62.0 99 38.4
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 5.2e-07 58.2 31 83.9
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 2.0e-06 56.2 32 81.2
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 5.7e-06 54.7 39 59.0


User provided reference genes

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