Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.9e-140 501.9 257 100.0
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 8.9e-73 277.7 254 66.9
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 4.6e-61 238.8 243 59.3
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.9e-59 233.4 250 58.4
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.4e-57 227.3 240 58.3
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 5.8e-56 221.9 240 57.5
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 7.6e-56 221.5 255 52.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 2.2e-55 219.9 253 54.9
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 4.9e-55 218.8 240 55.4
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.1e-54 217.6 243 54.3
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.4e-54 216.5 263 53.2
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 3.2e-54 216.1 240 55.0
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 7.1e-54 214.9 249 53.4
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.6e-53 213.8 247 53.4
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.6e-53 213.8 250 51.6
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.7e-53 213.0 241 52.7
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 3.5e-53 212.6 237 53.2
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 6.0e-53 211.8 252 52.4
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 6.0e-53 211.8 230 56.1
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 6.0e-53 211.8 237 54.0
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 7.9e-53 211.5 248 53.2
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.0e-52 211.1 248 52.0
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.3e-52 210.7 247 53.8
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.3e-52 210.7 247 54.3
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.8e-52 210.3 241 52.3
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.8e-52 210.3 248 51.6
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.8e-52 210.3 237 53.2
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 2.3e-52 209.9 248 50.8
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 2.3e-52 209.9 242 54.1
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 5.1e-52 208.8 240 54.6
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 5.1e-52 208.8 244 54.9
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 6.7e-52 208.4 239 53.6
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 8.7e-52 208.0 246 52.0
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 8.7e-52 208.0 237 54.4
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.5e-51 207.2 241 54.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.9e-51 206.8 252 52.0
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 2.5e-51 206.5 251 51.4
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 4.3e-51 205.7 248 51.6
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 4.3e-51 205.7 247 51.4
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.1e-50 203.4 238 50.0
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.8e-50 203.0 248 50.8
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.7e-50 202.6 239 51.9
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 3.7e-50 202.6 250 50.0
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.7e-50 202.6 235 51.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 4.8e-50 202.2 259 50.2
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 6.2e-50 201.8 244 51.2
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.1e-49 201.1 235 51.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-49 201.1 239 51.5
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.4e-49 200.7 236 51.7
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.8e-49 200.3 244 50.8
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.4e-49 199.9 237 51.1
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.5e-48 197.2 256 49.2
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.6e-48 196.4 237 52.3
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 5.8e-48 195.3 254 49.2
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 9.9e-48 194.5 262 48.9
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.3e-47 194.1 239 51.5
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.7e-47 193.7 255 47.1
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 1.7e-47 193.7 228 51.3
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 2.2e-47 193.4 253 51.0
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.8e-47 192.6 132 73.5
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 4.9e-47 192.2 258 47.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 4.9e-47 192.2 253 49.8
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 4.9e-47 192.2 233 50.2
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 8.4e-47 191.4 132 73.5
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.1e-46 191.0 245 48.2
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.1e-46 191.0 230 50.4
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.4e-46 190.7 236 50.0
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-46 190.7 239 49.8
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.4e-46 190.7 239 49.8
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.4e-46 190.7 239 49.8
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.9e-46 190.3 235 49.4
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 4.2e-46 189.1 139 74.1
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 4.2e-46 189.1 232 51.7
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 5.5e-46 188.7 236 49.2
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 7.1e-46 188.3 255 46.7
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 9.3e-46 188.0 235 49.4
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 9.3e-46 188.0 232 51.7
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.6e-45 187.2 230 50.0
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 4.6e-45 185.7 237 48.9
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.0e-44 184.5 226 48.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.0e-44 184.5 125 75.2
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 1.8e-44 183.7 246 48.0
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.3e-44 183.3 231 48.9
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 8.7e-44 181.4 247 46.6
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 8.7e-44 181.4 247 46.6
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 8.7e-44 181.4 118 73.7
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 1.1e-43 181.0 226 47.8
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.5e-43 180.6 213 49.8
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 2.5e-43 179.9 123 72.4
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.5e-43 179.9 257 45.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 3.3e-43 179.5 245 46.9
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 5.6e-43 178.7 229 47.2
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 5.6e-43 178.7 236 47.5
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 7.4e-43 178.3 136 65.4
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.6e-42 177.2 228 50.0
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 2.1e-42 176.8 234 47.0
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.1e-42 176.8 110 78.2
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 3.7e-42 176.0 253 43.9
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 4.8e-42 175.6 114 76.3
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 3.1e-41 172.9 141 65.2
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 4.0e-41 172.6 261 44.4
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 6.9e-41 171.8 241 46.1
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.2e-40 171.0 256 45.3
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 2.0e-40 170.2 224 48.7
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 2.0e-40 170.2 246 45.1
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 7.6e-40 168.3 111 72.1
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 3.8e-39 166.0 122 68.9
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 3.8e-39 166.0 122 68.9
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 3.8e-39 166.0 122 68.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.2e-38 162.5 238 45.8
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 2.1e-37 160.2 223 42.6
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.2e-30 136.3 111 64.0
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.1e-29 133.7 181 48.6
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.5e-27 127.5 97 67.0
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.3e-27 126.3 97 66.0
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.7e-26 122.9 97 64.9
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.5e-24 115.9 142 50.0
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.7e-23 114.0 109 59.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 8.5e-23 111.7 73 78.1
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 8.5e-23 111.7 188 41.5
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 3.9e-20 102.8 167 45.5
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.2e-18 97.1 148 37.8
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 1.5e-16 90.9 158 41.8
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.5e-16 90.9 68 66.2
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.0e-16 90.5 103 42.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 5.0e-15 85.9 80 62.5
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.4e-14 84.3 159 40.3
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 2.5e-14 83.6 165 33.3
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 2.5e-14 83.6 251 29.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.2e-13 81.3 144 33.3
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.6e-13 79.7 194 34.5
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.4e-09 67.8 145 39.3
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.3e-09 65.9 50 68.0
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.3e-07 61.2 130 34.6
CSS0018444 Camellia sinensis var. sinensis HOM05D049081 ORTHO05D112653 5.0e-07 59.3 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 8.5e-07 58.5 82 36.6
CSS0030303 Camellia sinensis var. sinensis HOM05D049081 ORTHO05D109731 1.1e-06 58.2 44 70.5
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.9e-06 57.4 40 75.0


User provided reference genes

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