Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 9.7e-190 666.8 363 100.0
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.9e-133 479.2 367 74.9
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 1.6e-107 393.7 379 66.0
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.6e-102 376.3 394 64.5
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.7e-101 373.6 394 64.5
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 3.8e-93 345.9 380 59.5
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.2e-92 342.8 408 56.6
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.0e-90 337.8 382 57.6
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 6.7e-90 335.1 383 61.4
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.3e-88 330.9 378 56.9
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.8e-88 328.9 384 60.4
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.8e-87 327.0 376 58.2
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 4.0e-87 325.9 376 57.7
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 2.6e-86 323.2 387 56.6
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 3.4e-86 322.8 384 59.1
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 4.5e-86 322.4 385 59.2
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 4.2e-84 315.8 387 55.0
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.6e-83 313.9 392 57.9
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 3.5e-83 312.8 375 58.9
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 6.0e-83 312.0 393 55.0
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.8e-82 310.5 379 57.0
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.3e-82 310.1 461 48.2
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 3.9e-82 309.3 372 55.9
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 5.6e-81 305.4 380 58.9
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.1e-80 303.5 372 56.5
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 9.0e-79 298.1 391 56.8
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 2.0e-78 297.0 387 58.4
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.4e-78 296.2 372 52.7
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.0e-77 294.7 374 54.5
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.2e-77 293.5 395 51.9
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 4.9e-77 292.4 390 52.3
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 4.2e-76 289.3 389 56.0
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.6e-75 287.3 382 54.7
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 2.1e-75 287.0 383 54.3
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 3.5e-75 286.2 383 53.0
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 4.6e-75 285.8 389 51.9
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 6.0e-75 285.4 394 50.5
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.8e-74 283.9 390 53.3
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 5.1e-74 282.3 387 52.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 5.1e-74 282.3 382 53.1
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.7e-74 282.0 381 56.7
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.1e-73 281.2 384 53.1
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.1e-73 281.2 396 54.0
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.5e-73 280.8 387 54.5
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 2.8e-72 276.6 387 54.0
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.1e-71 274.6 389 49.9
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.4e-71 274.2 393 50.6
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 5.3e-71 272.3 374 51.6
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.0e-71 271.6 383 52.7
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.5e-70 270.8 386 48.2
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 2.6e-70 270.0 382 49.0
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.6e-70 270.0 384 50.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.6e-70 270.0 375 53.3
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.3e-69 267.7 290 59.3
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.2e-69 266.9 384 50.0
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.1e-68 264.6 384 51.3
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.4e-68 264.2 386 50.3
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.9e-68 263.8 378 53.7
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.2e-68 263.1 378 55.3
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 5.5e-68 262.3 389 50.9
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 9.4e-68 261.5 348 49.1
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 9.4e-68 261.5 347 54.2
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.6e-67 260.8 402 52.2
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.0e-66 258.1 381 49.3
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 3.0e-66 256.5 373 49.1
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.9e-66 256.1 393 51.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.9e-66 256.1 400 50.2
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.0e-65 253.8 391 50.9
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 2.5e-65 253.4 370 53.0
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 2.8e-64 250.0 383 47.3
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.8e-64 250.0 366 50.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.8e-63 247.3 383 52.5
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.8e-63 247.3 369 52.3
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 4.1e-63 246.1 376 46.8
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 4.1e-63 246.1 342 51.5
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 7.7e-62 241.9 379 50.7
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.7e-61 240.7 375 51.5
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 2.9e-61 240.0 380 50.0
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.1e-60 238.0 382 50.5
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.7e-59 232.6 374 49.5
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 7.9e-59 231.9 368 51.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.0e-58 231.5 352 53.1
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.4e-58 231.1 376 45.2
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.4e-58 231.1 366 50.3
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.4e-58 231.1 366 50.3
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.8e-58 230.7 261 59.4
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.1e-58 229.2 367 50.4
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.1e-58 229.2 376 45.5
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.5e-57 227.6 333 50.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.6e-57 226.9 292 55.8
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.3e-57 226.5 371 50.4
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.7e-56 223.0 331 48.9
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 4.8e-56 222.6 368 46.7
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.8e-56 222.6 379 48.3
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.2e-56 221.9 384 49.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 2.4e-55 220.3 373 43.2
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.4e-55 220.3 343 48.4
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.2e-54 218.0 381 44.1
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.5e-54 217.6 331 48.0
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 3.5e-54 216.5 376 49.2
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 7.7e-54 215.3 379 49.1
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 7.7e-54 215.3 369 46.1
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.0e-53 214.9 448 39.5
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.7e-53 214.2 378 42.9
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.2e-53 213.8 368 47.6
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.2e-53 213.8 398 46.5
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 6.5e-53 212.2 372 45.7
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 8.5e-53 211.8 378 47.4
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.1e-52 211.5 380 47.4
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-52 211.5 453 39.7
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.6e-51 206.5 379 46.4
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.8e-50 204.1 380 42.9
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 3.9e-50 203.0 375 41.1
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 6.7e-50 202.2 374 40.4
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.1e-49 201.4 376 42.3
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.3e-48 198.0 375 42.1
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.2e-48 197.2 457 38.3
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.2e-48 197.2 373 45.8
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.4e-47 194.5 344 47.7
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 2.4e-47 193.7 338 45.3
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.6e-46 191.0 378 44.2
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 6.1e-43 179.1 369 43.6
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 8.8e-42 175.3 343 40.2
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.2e-41 174.9 357 42.3
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.2e-41 174.9 372 44.1
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.5e-41 174.5 189 61.9
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.3e-40 171.4 371 37.7
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.1e-39 168.3 355 41.1
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.1e-39 168.3 326 42.6
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.6e-38 164.5 345 40.3
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.5e-38 162.9 382 36.6
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.5e-38 162.9 373 37.0
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.9e-37 160.2 370 41.1
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.9e-36 157.5 389 37.5
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 3.2e-36 156.8 346 40.2
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 5.5e-36 156.0 371 35.6
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 9.4e-36 155.2 340 38.2
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 8.0e-35 152.1 387 37.5
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 1.8e-34 151.0 350 39.1
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.3e-34 150.6 349 35.0
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 5.2e-34 149.4 238 50.0
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.4e-33 146.4 333 42.0
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.4e-33 146.4 333 42.0
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 5.7e-33 146.0 342 38.9
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 2.2e-32 144.1 350 40.3
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 8.3e-32 142.1 268 44.8
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.4e-31 141.4 395 34.9
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-31 141.0 358 35.5
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.4e-31 140.6 273 42.9
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.7e-29 134.4 381 38.8
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.0e-29 132.9 223 48.4
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 3.3e-28 130.2 251 42.6
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.2e-27 128.3 210 47.6
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.1e-27 127.5 259 42.1
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 4.0e-26 123.2 308 37.3
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.5e-25 121.3 308 36.7
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.3e-24 118.2 218 45.0
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 3.7e-24 116.7 139 57.6
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 1.1e-23 115.2 212 42.5
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 4.1e-23 113.2 248 40.7
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.4e-23 112.8 210 44.3
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.2e-22 111.7 132 56.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.0e-21 108.6 353 36.3
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.9e-21 107.1 213 42.7
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.9e-21 107.1 213 42.7
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.6e-19 101.3 212 44.8
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 2.8e-19 100.5 248 37.9
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 2.8e-19 100.5 248 37.9
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.4e-18 98.2 350 32.0
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.1e-15 88.6 299 31.1
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 3.3e-12 77.0 219 33.8
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 2.3e-10 70.9 323 27.6
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.2e-10 69.7 119 52.1
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.6e-09 67.4 121 42.1
vmacro18415 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.8e-09 66.2 95 42.1
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 2.2e-08 64.3 66 48.5
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.1e-07 60.1 69 46.4
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.8e-06 55.8 59 54.2


User provided reference genes

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