Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.8e-179 632.5 320 100.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.7e-140 501.5 288 89.6
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 8.9e-139 497.3 288 88.5
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.2e-129 466.1 288 82.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 3.0e-126 455.7 290 80.0
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 3.3e-109 399.1 285 74.0
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 6.9e-107 391.3 289 73.4
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.2e-105 386.3 286 71.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.2e-104 382.5 290 71.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 6.0e-103 378.3 311 67.8
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 7.9e-103 377.9 286 69.9
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.1e-102 375.2 287 69.3
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 6.7e-102 374.8 240 80.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 6.7e-102 374.8 233 80.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 8.7e-102 374.4 287 69.3
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.1e-101 374.0 294 68.4
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.5e-101 373.6 270 71.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.9e-101 373.2 287 71.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.9e-101 373.2 285 69.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.9e-101 373.2 233 81.1
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.5e-101 372.9 233 79.8
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 5.7e-101 371.7 252 75.4
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.6e-100 370.2 283 67.1
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.1e-100 369.8 280 70.4
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.1e-100 369.8 286 67.8
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 2.8e-100 369.4 285 69.5
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 3.7e-100 369.0 287 70.0
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.7e-100 369.0 247 78.5
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.7e-100 369.0 252 75.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.8e-100 368.6 285 68.4
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.8e-100 368.6 282 68.4
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 8.2e-100 367.9 242 78.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 8.2e-100 367.9 247 78.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 8.2e-100 367.9 283 70.3
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.1e-99 367.5 312 63.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.1e-99 367.5 290 66.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-99 367.1 282 68.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.4e-99 367.1 252 76.2
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.8e-99 366.7 243 76.1
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.4e-99 366.3 285 70.9
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.4e-99 366.3 252 75.4
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.4e-99 366.3 232 77.6
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 4.1e-99 365.5 230 79.6
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 5.3e-99 365.2 285 69.1
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 6.9e-99 364.8 243 77.0
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.9e-99 364.8 286 67.5
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 6.9e-99 364.8 286 66.8
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.2e-98 364.0 286 68.2
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.5e-98 363.6 285 69.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.0e-98 363.2 282 67.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 3.4e-98 362.5 233 78.5
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.4e-98 362.5 286 67.8
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 4.5e-98 362.1 281 68.7
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.3e-97 360.5 289 65.7
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.9e-97 359.4 230 78.7
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.8e-97 359.0 291 67.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.0e-97 358.6 242 76.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 6.5e-97 358.2 238 75.6
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.1e-96 357.5 233 78.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.4e-96 357.1 233 77.7
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-96 357.1 282 68.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.4e-96 357.1 291 66.3
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.4e-96 357.1 286 68.9
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.9e-96 356.7 233 77.7
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.9e-96 356.7 274 69.3
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.5e-96 356.3 238 76.5
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 3.2e-96 355.9 232 76.7
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.2e-96 355.9 266 69.5
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.2e-96 355.9 238 76.1
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 3.2e-96 355.9 233 76.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.2e-96 355.9 266 69.5
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.2e-96 355.9 266 69.5
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 3.2e-96 355.9 233 76.4
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 9.3e-96 354.4 242 74.0
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.2e-95 354.0 269 70.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.7e-95 352.8 230 77.8
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.7e-95 352.8 225 79.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 4.6e-95 352.1 233 76.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 6.1e-95 351.7 254 71.7
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 7.9e-95 351.3 270 69.3
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 7.9e-95 351.3 287 66.6
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.0e-94 350.9 248 73.0
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.0e-94 350.9 230 77.8
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-94 350.5 248 72.6
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-94 350.1 227 76.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.3e-94 349.7 247 72.9
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.3e-94 349.7 247 72.5
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.0e-94 349.4 248 72.2
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.5e-93 347.1 226 78.3
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 7.4e-93 344.7 266 69.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.3e-92 344.0 233 75.1
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.8e-92 342.0 238 73.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.8e-92 342.0 238 73.9
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 8.2e-92 341.3 229 74.7
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.8e-91 340.1 287 64.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.3e-91 338.6 233 72.1
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.5e-90 337.0 265 66.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-90 336.3 282 63.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.9e-90 335.1 253 69.6
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.9e-88 330.1 231 74.0
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 3.2e-88 329.3 237 69.6
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.2e-88 328.2 232 70.3
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.7e-87 326.2 230 70.9
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 6.1e-87 325.1 227 70.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.4e-86 323.9 276 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.1e-85 320.9 236 68.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 7.4e-85 318.2 240 65.8
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-84 317.4 248 68.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.7e-84 317.0 234 69.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 8.2e-84 314.7 247 65.6
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.8e-83 313.5 193 82.4
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 9.1e-83 311.2 201 77.1
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.3e-81 307.4 203 77.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 5.0e-81 305.4 201 75.1
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.5e-81 305.1 197 79.7
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.1e-80 304.3 200 75.5
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.5e-80 303.1 215 69.8
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.2e-78 295.4 253 60.5
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 6.7e-78 295.0 201 75.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.1e-77 294.3 200 76.0
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.3e-77 292.7 287 58.2
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.7e-76 290.4 259 59.5
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 2.4e-75 286.6 226 68.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.6e-74 283.1 200 73.5
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.7e-73 280.4 231 64.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 3.8e-73 279.3 200 71.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.5e-72 277.3 232 65.1
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 3.6e-71 272.7 241 58.5
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.4e-70 270.8 218 66.1
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.3e-70 270.0 163 82.2
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.2e-70 268.9 188 75.5
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.5e-69 267.3 238 60.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 3.1e-67 259.6 233 60.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.0e-66 256.9 227 57.7
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.2e-60 236.9 241 52.7
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 4.7e-55 219.2 202 59.4
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-52 210.7 230 51.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-51 207.2 147 73.5
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.5e-50 202.6 141 71.6
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 6.6e-49 198.7 159 70.4
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.5e-48 196.8 147 68.7
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.2e-43 179.9 148 65.5
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.6e-42 176.0 148 66.2
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.1e-38 163.3 132 66.7
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.6e-34 149.4 101 72.3
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.6e-34 149.4 101 72.3
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.7e-33 147.5 125 58.4
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-30 138.3 113 64.6
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 6.4e-28 129.0 158 46.8
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.4e-27 125.9 74 82.4
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.1e-26 124.0 74 81.1
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.7e-26 123.6 74 81.1
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.5e-26 123.2 74 81.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.3e-25 121.3 74 78.4
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.4e-22 111.3 195 36.9
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.4e-21 106.7 71 76.1
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 9.2e-19 98.6 90 55.6
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.7e-18 97.1 64 79.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 9.6e-16 88.6 63 77.8
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 6.2e-15 85.9 66 71.2
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.4e-14 84.7 64 67.2
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 3.8e-12 76.6 44 84.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 8.4e-12 75.5 64 62.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 5.4e-11 72.8 44 77.3
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 7.1e-11 72.4 46 82.6
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-08 64.7 64 54.7
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 5.6e-08 62.8 62 54.8
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.8e-07 60.5 208 27.4
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.4e-06 58.2 38 63.2
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.4e-06 58.2 38 63.2
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-06 58.2 77 48.1


User provided reference genes

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