Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 3.3e-153 545.0 285 100.0
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 4.4e-105 385.2 285 73.3
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 1.9e-100 369.8 289 71.3
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 8.6e-93 344.4 280 66.8
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 1.6e-91 340.1 241 70.5
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 2.1e-91 339.7 241 72.6
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 4.7e-91 338.6 245 70.6
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 6.2e-91 338.2 287 63.4
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 8.1e-91 337.8 254 69.3
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 7.5e-89 331.3 290 63.4
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 2.9e-88 329.3 246 69.1
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 1.1e-87 327.4 287 59.6
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 1.2e-86 323.9 238 69.7
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 7.8e-86 321.2 295 59.7
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 5.1e-85 318.5 257 65.0
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 1.5e-84 317.0 259 63.3
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 2.5e-84 316.2 237 68.4
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 5.6e-84 315.1 281 60.5
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 7.3e-84 314.7 259 66.4
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 6.2e-83 311.6 274 60.6
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 2.4e-82 309.7 276 60.9
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 6.8e-82 308.1 290 57.9
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 1.5e-81 307.0 287 59.6
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 1.5e-81 307.0 269 61.7
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.4e-81 305.8 291 58.4
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 3.4e-81 305.8 281 61.6
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 5.8e-81 305.1 249 62.2
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 5.8e-81 305.1 291 58.4
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 5.8e-81 305.1 255 63.9
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 7.6e-81 304.7 291 58.4
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 7.6e-81 304.7 266 60.2
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.9e-80 302.8 290 59.0
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 3.8e-80 302.4 278 58.3
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 6.4e-80 301.6 243 66.3
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 6.4e-80 301.6 242 64.5
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 1.9e-79 300.1 291 56.4
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 1.9e-79 300.1 275 57.8
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 3.2e-79 299.3 244 63.5
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 4.2e-79 298.9 243 65.8
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 5.4e-79 298.5 244 61.1
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 7.1e-79 298.1 241 63.1
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 1.6e-78 297.0 271 57.2
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 1.6e-78 297.0 291 57.4
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 2.7e-78 296.2 292 55.5
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 3.5e-78 295.8 289 56.1
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 4.6e-78 295.4 282 56.7
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 4.6e-78 295.4 291 55.7
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.0e-78 295.0 296 56.1
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 5.1e-77 292.0 235 66.0
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 4.3e-76 288.9 290 53.8
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 5.6e-76 288.5 239 66.5
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 5.6e-76 288.5 280 57.5
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 5.6e-76 288.5 278 56.1
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 5.6e-76 288.5 244 59.8
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 7.3e-76 288.1 241 63.5
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 7.3e-76 288.1 241 63.5
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 9.6e-76 287.7 229 63.8
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 4.7e-75 285.4 241 61.8
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 6.2e-75 285.0 229 63.3
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 1.4e-74 283.9 235 61.7
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.4e-74 283.9 267 57.7
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 1.8e-74 283.5 256 59.8
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 2.4e-74 283.1 228 64.0
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 2.6e-73 279.6 244 59.8
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 9.9e-73 277.7 246 60.2
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 6.4e-72 275.0 284 54.9
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 6.4e-72 275.0 242 58.3
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 5.4e-71 271.9 228 63.6
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 1.6e-70 270.4 281 54.8
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 4.6e-70 268.9 238 60.9
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 4.6e-70 268.9 232 62.1
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 6.0e-70 268.5 255 55.3
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 7.8e-70 268.1 245 58.8
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 1.3e-69 267.3 231 58.0
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 3.9e-69 265.8 268 52.6
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 2.5e-68 263.1 261 54.0
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 3.3e-68 262.7 243 57.2
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 4.3e-68 262.3 266 52.3
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 4.3e-68 262.3 261 54.8
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 9.6e-68 261.2 287 52.3
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 1.6e-67 260.4 242 55.8
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 6.9e-66 255.0 322 47.8
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 1.2e-65 254.2 285 49.8
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 1.5e-65 253.8 245 55.1
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 2.0e-65 253.4 244 53.7
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.8e-65 251.9 280 50.0
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 1.7e-64 250.4 242 52.9
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 2.2e-64 250.0 281 49.8
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 3.8e-64 249.2 286 49.7
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 3.8e-64 249.2 286 49.7
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 6.4e-64 248.4 284 48.6
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 1.4e-63 247.3 263 51.0
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 1.4e-63 247.3 263 51.0
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 1.9e-63 246.9 238 53.8
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 2.4e-63 246.5 238 52.5
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 4.2e-63 245.7 242 52.5
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 5.4e-63 245.4 236 54.2
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 1.0e-61 241.1 310 45.8
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 3.7e-59 232.6 208 59.6
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 3.7e-59 232.6 208 59.6
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 4.5e-57 225.7 281 47.3
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.3e-56 224.2 169 64.5
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 4.9e-56 222.2 186 57.0
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 2.5e-55 219.9 220 55.9
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 3.5e-54 216.1 265 45.3
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 3.3e-52 209.5 288 42.0
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 2.8e-51 206.5 294 44.2
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 4.8e-51 205.7 159 63.5
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 9.0e-50 201.4 233 46.4
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 4.5e-49 199.1 231 45.5
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 5.8e-49 198.7 244 46.3
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 1.3e-48 197.6 232 49.6
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 2.2e-48 196.8 133 66.2
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 8.4e-48 194.9 289 41.5
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.9e-47 193.7 233 45.9
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 2.7e-46 189.9 133 67.7
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 1.3e-45 187.6 247 44.5
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 2.4e-42 176.8 108 80.6
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.8e-40 169.5 278 40.6
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 7.9e-38 161.8 132 56.8
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 2.3e-37 160.2 294 38.8
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 7.4e-36 155.2 205 42.0
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.8e-34 150.6 248 41.5
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 4.2e-31 139.4 85 76.5
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.4e-29 134.4 232 41.4
Rhsim09G0096800 Rhododendron simsii HOM05D005274 ORTHO05D006485 2.3e-29 133.7 165 55.2
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 5.0e-24 115.9 259 32.4
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 9.4e-23 111.7 113 55.8
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 1.2e-22 111.3 102 65.7
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 1.0e-21 108.2 288 27.1
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 5.7e-20 102.4 107 43.9
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 3.7e-19 99.8 107 43.0
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 1.7e-16 90.9 65 61.5
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 2.5e-15 87.0 65 58.5
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 6.1e-14 82.4 139 36.7
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 4.0e-13 79.7 243 30.9
Hma1.2p1_0474F.1_g160730 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 4.4e-12 76.3 100 55.0
SEGI_09940 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 3.7e-11 73.2 119 35.3
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 2.2e-08 63.9 78 42.3
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 2.9e-08 63.5 42 59.5
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 1.5e-07 61.2 42 57.1
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 2.5e-07 60.5 136 29.4
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 3.2e-07 60.1 126 33.3
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 3.2e-07 60.1 117 31.6
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 3.2e-07 60.1 135 29.6
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 5.5e-07 59.3 135 28.9
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 5.5e-07 59.3 135 28.9
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 5.5e-07 59.3 135 29.6
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 7.2e-07 58.9 117 30.8
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 7.2e-07 58.9 45 53.3
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 9.4e-07 58.5 127 29.9
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 9.4e-07 58.5 126 30.2
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 9.4e-07 58.5 135 28.9
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 9.4e-07 58.5 135 28.9
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 9.4e-07 58.5 135 28.9
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 1.2e-06 58.2 135 28.1
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 1.2e-06 58.2 135 28.9
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 1.2e-06 58.2 127 29.9
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 1.6e-06 57.8 135 28.9
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 1.6e-06 57.8 135 28.9
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 1.6e-06 57.8 127 29.9
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 2.1e-06 57.4 126 29.4
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 2.1e-06 57.4 127 29.9
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 2.7e-06 57.0 117 29.9
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 3.6e-06 56.6 126 28.6
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 3.6e-06 56.6 136 27.9
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 3.6e-06 56.6 135 28.9
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 4.7e-06 56.2 127 29.1
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 4.7e-06 56.2 127 29.1
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 4.7e-06 56.2 126 29.4
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 29.9
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 30.8
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 8.0e-06 55.5 117 28.2


User provided reference genes

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