Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 0.0e+00 1962.6 1018 100.0
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 0.0e+00 1736.5 1128 82.1
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1635.9 1029 82.9
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 0.0e+00 1625.5 1029 82.0
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 0.0e+00 1539.6 1021 77.0
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 0.0e+00 1459.5 1022 72.7
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1458.4 1027 71.4
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 0.0e+00 1455.3 1022 71.7
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 0.0e+00 1453.3 1029 71.9
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 0.0e+00 1453.3 1026 72.4
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 0.0e+00 1449.1 1030 72.2
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 0.0e+00 1447.6 1031 72.2
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 0.0e+00 1444.5 1031 71.4
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 0.0e+00 1442.6 914 80.6
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1439.9 1017 71.1
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 0.0e+00 1439.5 1026 72.0
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 0.0e+00 1438.3 1022 70.9
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 0.0e+00 1436.0 1002 74.2
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 0.0e+00 1436.0 1025 72.0
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 0.0e+00 1433.7 1026 70.8
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 0.0e+00 1431.8 1024 72.2
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 0.0e+00 1431.0 1042 71.1
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 0.0e+00 1425.2 1023 72.2
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1419.1 1040 69.8
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1418.7 1027 70.7
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1418.7 1027 70.7
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 0.0e+00 1417.1 1041 70.6
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 0.0e+00 1412.5 1026 70.2
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 0.0e+00 1408.3 1026 70.4
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1405.2 1022 70.3
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1401.7 1035 69.7
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1400.6 1025 69.5
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 0.0e+00 1398.3 1029 69.9
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1395.2 1023 69.2
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1394.8 1026 69.4
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 0.0e+00 1394.0 1025 69.7
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1394.0 1026 69.5
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 0.0e+00 1393.6 1025 69.2
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 0.0e+00 1387.5 1030 69.1
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1385.2 1017 69.5
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 0.0e+00 1372.1 1064 67.0
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 0.0e+00 1372.1 1033 68.6
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1367.1 1019 69.3
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1361.7 1069 66.8
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 0.0e+00 1359.0 1018 68.4
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 0.0e+00 1355.1 1029 67.7
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 0.0e+00 1350.9 1035 68.7
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 0.0e+00 1349.0 1029 68.0
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 0.0e+00 1348.2 1029 67.4
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 0.0e+00 1347.8 1015 69.3
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1347.8 1029 68.1
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 0.0e+00 1343.2 969 70.6
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 0.0e+00 1342.8 1025 66.7
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1342.0 1029 67.9
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 0.0e+00 1336.2 1049 67.0
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1333.2 1021 65.9
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 0.0e+00 1332.8 997 68.8
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1332.4 1030 65.5
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 0.0e+00 1332.4 1098 64.0
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 0.0e+00 1327.8 1025 65.8
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1325.5 1009 67.9
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 0.0e+00 1323.5 1026 66.2
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 0.0e+00 1317.4 1029 66.5
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1315.1 1058 64.5
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 0.0e+00 1314.7 1025 64.6
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1312.7 1066 63.6
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 0.0e+00 1307.0 1025 64.3
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1304.3 1029 66.0
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1301.6 1029 65.9
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1296.2 1085 63.7
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 0.0e+00 1293.9 1021 64.6
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 0.0e+00 1292.7 1057 64.6
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 0.0e+00 1273.8 1039 64.2
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 0.0e+00 1263.1 1028 64.5
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1260.4 1029 64.8
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 0.0e+00 1256.5 1008 65.3
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 0.0e+00 1256.1 1055 63.3
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 0.0e+00 1255.0 1022 63.4
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1251.5 1025 63.6
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 0.0e+00 1250.7 992 65.0
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1244.6 1032 62.5
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 0.0e+00 1237.6 1045 62.8
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 0.0e+00 1234.6 937 67.4
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 0.0e+00 1195.6 914 65.4
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 0.0e+00 1189.9 1062 59.3
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 0.0e+00 1161.0 1029 58.8
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 0.0e+00 1146.7 891 65.5
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 2.5e-288 995.7 794 66.1
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 4.2e-283 978.4 1028 52.9
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 3.4e-277 958.7 1046 50.9
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 7.2e-259 897.9 945 52.6
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 1.1e-254 884.0 778 60.5
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 4.9e-231 805.4 618 66.8
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 3.9e-228 795.8 692 61.6
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 4.7e-226 788.9 633 63.7
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 8.9e-225 784.6 629 63.4
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 8.4e-215 751.5 1041 40.2
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 1.5e-211 740.7 1042 39.6
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 1.7e-183 647.5 650 51.5
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 6.5e-167 592.4 583 56.4
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 4.4e-163 579.7 588 55.3
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 2.9e-159 567.0 1032 36.6
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 7.9e-157 558.9 414 69.8
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 6.1e-149 532.7 394 64.7
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 2.3e-148 530.8 394 64.5
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 8.3e-138 495.7 364 71.4
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 2.0e-131 474.6 1024 35.6
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 2.4e-129 467.6 417 58.3
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 3.2e-121 440.7 1008 30.7
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 7.0e-113 412.9 464 51.9
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 1.8e-100 371.7 275 65.5
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 6.9e-92 343.2 322 56.5
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 9.9e-83 312.8 212 74.1
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.6e-80 305.4 305 54.8
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 2.1e-77 295.0 915 27.5
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 1.6e-64 252.3 191 68.6
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 3.4e-51 208.0 928 24.8
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 2.9e-50 204.9 187 53.5
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 2.9e-50 204.9 385 39.0
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 1.1e-46 193.0 136 67.6
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 2.8e-45 188.3 116 83.6
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 1.1e-44 186.4 141 67.4
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 7.7e-43 180.3 134 66.4
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 2.6e-38 165.2 225 47.1
Lju470A13T26 Lonicera japonica HOM05D001046 ORTHO05D005883 1.8e-31 142.5 119 59.7
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 4.4e-30 137.9 129 56.6
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 5.7e-30 137.5 131 58.8
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 1.3e-26 126.3 87 69.0
Psat5g215000 Pisum sativum HOM05D001046 ORTHO05D015028 1.3e-18 99.8 68 66.2
Sabra10G0102000 Salix brachista HOM05D001046 ORTHO05D005883 6.6e-18 97.4 73 72.6
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 1.1e-17 96.7 77 64.9
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 7.2e-17 94.0 68 70.6
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.0e-15 90.1 72 61.1
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 1.0e-15 90.1 73 57.5
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 8.9e-15 87.0 77 54.5
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 4.4e-14 84.7 136 38.2
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 2.2e-13 82.4 104 47.1
Lju470A14T37 Lonicera japonica HOM05D001046 ORTHO05D005883 2.2e-13 82.4 100 46.0
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 2.0e-11 75.9 50 74.0
Gohir.A06G118000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.3e-10 73.2 55 63.6
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.3e-10 72.4 87 47.1
QL03p044430 Quercus lobata HOM05D001046 ORTHO05D005883 6.6e-10 70.9 41 78.0
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.1e-09 70.1 56 62.5
Lju470A13T24 Lonicera japonica HOM05D001046 ORTHO05D005883 1.5e-09 69.7 157 35.7
C07p18980 Brassica napus HOM05D001046 ORTHO05D042866 5.6e-09 67.8 45 66.7
BolC7t42408H Brassica oleracea HOM05D001046 ORTHO05D042866 5.6e-09 67.8 45 66.7
PGSC0003DMG400025125 Solanum tuberosum HOM05D001046 ORTHO05D005883 1.2e-08 66.6 41 75.6
Ca_05116_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 1.4e-07 63.2 42 71.4
CsaV3_3G044730 Cucumis sativus L. HOM05D001046 ORTHO05D005883 3.1e-07 62.0 40 70.0
CDE04G0426 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 5.2e-07 61.2 42 66.7
Lalb_Chr04g0255061 Lupinus albus HOM05D001046 ORTHO05D005883 1.2e-06 60.1 41 68.3
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 7.5e-06 57.4 37 78.4
Lj5g0008258 Lotus japonicus HOM05D001046 ORTHO05D005883 7.5e-06 57.4 37 78.4
BcaB02g10406 Brassica carinata HOM05D002786 ORTHO05D003493 9.8e-06 57.0 840 20.6


User provided reference genes

Program Settings